Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.22□□□□□ -1.73
LRCH3Q96II8 RNU2-34P-201ENST00000516534 121 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
LRCH3Q96II8 CYP4A43P-201ENST00000568156 121 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 MIR4668-201ENST00000582284 70 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 AC087685.1-201ENST00000587507 141 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 Y_RNA.773-201ENST00000607168 90 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 AC242852.1-201ENST00000612151 96 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 AC244015.1-201ENST00000622301 99 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
LRCH3Q96II8 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LRCH3Q96II8 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.22□□□□□ -1.73
LRCH3Q96II8 ZNF271P-202ENST00000465539 1970 ntBASIC4.22□□□□□ -1.73
LRCH3Q96II8 MFSD8-236ENST00000641509 4050 ntBASIC4.21□□□□□ -1.73
LRCH3Q96II8 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
LRCH3Q96II8 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.21□□□□□ -1.73
LRCH3Q96II8 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
LRCH3Q96II8 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
LRCH3Q96II8 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
LRCH3Q96II8 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.21□□□□□ -1.74
LRCH3Q96II8 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LRCH3Q96II8 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LRCH3Q96II8 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LRCH3Q96II8 ZNF962P-201ENST00000443465 3140 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 RNU6-363P-201ENST00000362895 105 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 SNORA14A-201ENST00000364773 135 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 RNU6-652P-201ENST00000365488 107 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 MIR605-201ENST00000385078 83 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 HMGN2P8-201ENST00000391458 268 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 AC017083.1-201ENST00000428093 483 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 RNU7-23P-201ENST00000459465 62 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC4.21□□□□□ -1.74
LRCH3Q96II8 SNORD36C-201ENST00000516733 66 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 MIR4672-201ENST00000583126 81 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 MIR5187-201ENST00000583479 76 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 AC006160.2-201ENST00000637708 154 ntBASIC4.21□□□□□ -1.74
LRCH3Q96II8 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
LRCH3Q96II8 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.21□□□□□ -1.74
LRCH3Q96II8 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LRCH3Q96II8 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LRCH3Q96II8 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.2□□□□□ -1.74
LRCH3Q96II8 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
LRCH3Q96II8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
LRCH3Q96II8 RNU6-661P-201ENST00000362409 107 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 Y_RNA.96-201ENST00000363092 109 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 SNORA80A-201ENST00000363922 136 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RNU1-33P-201ENST00000364249 162 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RNU6-409P-201ENST00000384114 104 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 SNORA18-201ENST00000384416 132 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RNU6-1274P-201ENST00000384557 107 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 MIR1179-201ENST00000408703 91 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 MIR1183-201ENST00000408856 89 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.2□□□□□ -1.74
LRCH3Q96II8 AC097463.2-201ENST00000421074 142 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RPS12P18-201ENST00000442381 270 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 AP002884.2-201ENST00000471647 395 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 AC006445.1-201ENST00000491925 405 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RPL29P14-201ENST00000495837 428 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 RNU6-1291P-201ENST00000516591 104 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 MIR4325-201ENST00000583049 90 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 HSPE1P19-201ENST00000603327 295 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 uc_338.14-201ENST00000613162 166 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 MIR203B-201ENST00000636080 86 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LRCH3Q96II8 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.2□□□□□ -1.74
LRCH3Q96II8 UBE3AP2-201ENST00000429033 2259 ntBASIC4.2□□□□□ -1.74
LRCH3Q96II8 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.2□□□□□ -1.74
LRCH3Q96II8 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 Y_RNA.37-201ENST00000362606 108 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 SNORA31-201ENST00000362607 130 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 SNORD115-19-201ENST00000363098 82 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 SNORD115-18-201ENST00000363293 82 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 SNORD115-17-201ENST00000364612 82 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 Y_RNA.440-201ENST00000384120 114 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 ATP5A1P2-201ENST00000412323 255 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 AC025750.2-201ENST00000442609 450 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 AC010099.1-201ENST00000455434 375 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.19□□□□□ -1.74
LRCH3Q96II8 RNU7-25P-201ENST00000516544 62 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 AL513534.2-201ENST00000603836 250 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 AL359075.3-201ENST00000613288 217 ntBASIC4.19□□□□□ -1.74
LRCH3Q96II8 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LRCH3Q96II8 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
LRCH3Q96II8 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
LRCH3Q96II8 MIR448-201ENST00000362131 111 ntBASIC4.18□□□□□ -1.74
LRCH3Q96II8 MIR126-201ENST00000362291 85 ntBASIC4.18□□□□□ -1.74
LRCH3Q96II8 SNORD35B-201ENST00000363660 87 ntBASIC4.18□□□□□ -1.74
LRCH3Q96II8 SNORD115-28-201ENST00000363931 81 ntBASIC4.18□□□□□ -1.74
LRCH3Q96II8 RNA5SP399-201ENST00000364003 117 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms