Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.9□□□□□ -1.95
CHFRQ96EP1 MIR3674-201ENST00000636576 68 ntBASIC2.9□□□□□ -1.95
CHFRQ96EP1 U2.21-201ENST00000637295 81 ntBASIC2.9□□□□□ -1.95
CHFRQ96EP1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CHFRQ96EP1 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.9□□□□□ -1.95
CHFRQ96EP1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
CHFRQ96EP1 RNU6-1141P-201ENST00000364520 107 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.89□□□□□ -1.95
CHFRQ96EP1 RNU6-793P-201ENST00000384233 104 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 SNORA8.3-201ENST00000384679 139 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 MIR616-201ENST00000385293 97 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 MT-TT-201ENST00000387460 66 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 SNORA40.5-201ENST00000391061 128 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 AL139095.1-201ENST00000404326 391 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 RPS26P42-201ENST00000413485 326 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.89□□□□□ -1.95
CHFRQ96EP1 RPS3P1-201ENST00000456781 192 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 AC006026.2-201ENST00000457376 180 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 RN7SL633P-201ENST00000488974 297 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 AC016632.1-201ENST00000503994 196 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 MRPS36P2-201ENST00000512569 299 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 RNU6-1007P-201ENST00000516586 107 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 AC090049.2-201ENST00000550377 109 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.89□□□□□ -1.95
CHFRQ96EP1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.89□□□□□ -1.95
CHFRQ96EP1 MTND5P34-201ENST00000568888 325 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 U7.2-201ENST00000607576 63 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 AC010329.5-201ENST00000623497 2174 ntBASIC2.89□□□□□ -1.95
CHFRQ96EP1 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CHFRQ96EP1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 VTRNA1-1-201ENST00000363120 99 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU6-727P-201ENST00000363592 107 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU1-100P-201ENST00000365255 165 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU6-643P-201ENST00000384018 107 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU6-1310P-201ENST00000384153 107 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU6-588P-201ENST00000410281 105 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 AC063976.4-201ENST00000421971 163 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 AC245047.8-201ENST00000456455 284 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 AC007215.1-201ENST00000464893 276 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RN7SL499P-201ENST00000481141 276 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 RNU5E-3P-201ENST00000515913 68 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 SNORA31.23-201ENST00000517219 133 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 CR383656.8-201ENST00000549046 145 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 MIR5582-201ENST00000579697 68 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 MIR3914-2-201ENST00000637339 95 ntBASIC2.88□□□□□ -1.95
CHFRQ96EP1 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
CHFRQ96EP1 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.88□□□□□ -1.95
CHFRQ96EP1 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CHFRQ96EP1 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 RNU6-235P-201ENST00000362644 107 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 RNU6-778P-201ENST00000363269 103 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 Y_RNA.293-201ENST00000364908 93 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 RNU6-969P-201ENST00000383900 105 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 SNORA72.4-201ENST00000384174 132 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 RNU6-140P-201ENST00000384566 108 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 SNORA26.3-201ENST00000391119 136 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AL138827.1-201ENST00000402666 306 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC012306.1-201ENST00000423267 114 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC078809.1-201ENST00000427601 140 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 SUMO1P4-201ENST00000429430 302 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 AL121914.1-201ENST00000450188 156 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC021231.3-201ENST00000558497 370 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC025281.1-201ENST00000567026 265 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 MIR3646-201ENST00000578301 84 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 AL359198.2-201ENST00000611836 194 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 MIR6844-201ENST00000637122 62 ntBASIC2.87□□□□□ -1.95
CHFRQ96EP1 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.87□□□□□ -1.95
CHFRQ96EP1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CHFRQ96EP1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 RNU6-324P-201ENST00000363957 106 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 SNORA25.7-201ENST00000364375 127 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 Y_RNA.287-201ENST00000364853 94 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 RNU6-915P-201ENST00000364943 103 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 SNORA67.4-201ENST00000384688 142 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 MIR15B-201ENST00000385045 98 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 MIR9-1-201ENST00000385198 89 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 AL355497.1-201ENST00000406262 551 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 FTH1P15-201ENST00000406984 280 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 RNA5SP475-201ENST00000410568 110 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 CYCSP49-201ENST00000420810 319 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 SNORA31.16-201ENST00000516773 139 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 NACAP3-201ENST00000552100 481 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.86□□□□□ -1.95
CHFRQ96EP1 AC108081.1-201ENST00000604358 221 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 AL391903.3-201ENST00000612158 163 ntBASIC2.86□□□□□ -1.95
CHFRQ96EP1 MIR3529-201ENST00000637713 78 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms