Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SNORD23.1-201ENST00000408212 104 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MTND2P23-201ENST00000422990 651 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MTND5P22-201ENST00000458380 195 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 AC010655.3-201ENST00000478818 450 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 RNY3P15-201ENST00000516297 97 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 RNU6-1046P-201ENST00000516538 107 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MIR514B-201ENST00000516774 80 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 RNU7-110P-201ENST00000516891 62 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 AC055872.1-201ENST00000570978 278 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MIR5694-201ENST00000581190 76 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MIR376A1-201ENST00000616574 68 ntBASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CHMP4CQ96CF2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 RNU6-454P-201ENST00000364292 107 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 Y_RNA.276-201ENST00000364732 109 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 SNORD63-201ENST00000384262 68 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 RNU6-21P-201ENST00000384710 107 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 Y_RNA.570-201ENST00000384750 101 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 MIR1283-2-201ENST00000408621 87 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 RNU2-20P-201ENST00000410425 191 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 AC016909.1-201ENST00000415916 166 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 HMGN2P3-201ENST00000433603 273 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 HMGN2P5-201ENST00000436882 273 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 RNU6-1143P-201ENST00000516125 104 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 RNU6-1045P-201ENST00000516321 107 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 AC005786.1-201ENST00000588553 154 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 AC007229.1-201ENST00000590455 412 ntBASIC2.59□□□□□ -1.99
CHMP4CQ96CF2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.58□□□□□ -2
CHMP4CQ96CF2 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.58□□□□□ -2
CHMP4CQ96CF2 Y_RNA.101-201ENST00000363154 102 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 SNORA11.4-201ENST00000408823 129 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 RNU2-54P-201ENST00000410299 190 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 RPL23AP36-201ENST00000413895 458 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 SUMO1P2-201ENST00000452524 304 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 RNU6-155P-201ENST00000516347 100 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.58□□□□□ -2
CHMP4CQ96CF2 MIR4648-201ENST00000580107 72 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 MIR4423-201ENST00000580922 80 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 AC012640.5-201ENST00000623897 319 ntBASIC2.58□□□□□ -2
CHMP4CQ96CF2 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.57□□□□□ -2
CHMP4CQ96CF2 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
CHMP4CQ96CF2 snoU2-30.2-201ENST00000362805 70 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AL355497.1-201ENST00000406262 551 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC005042.3-201ENST00000453230 174 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 SNORD65B-201ENST00000459126 73 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC010598.1-201ENST00000510378 103 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 RNU2-19P-201ENST00000517288 84 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC027419.1-201ENST00000522976 328 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4CQ96CF2 MIR4300-201ENST00000581016 96 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC136443.5-201ENST00000603741 370 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 AC022441.3-201ENST00000605737 136 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.15-201ENST00000611544 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.16-201ENST00000613119 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.12-201ENST00000613778 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.20-201ENST00000613956 192 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.9-201ENST00000615427 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.11-201ENST00000616345 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.2-201ENST00000616535 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.3-201ENST00000617785 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.19-201ENST00000618602 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 RNU2-1-201ENST00000618664 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.6-201ENST00000619225 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.5-201ENST00000619465 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U2.10-201ENST00000620268 191 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 U6.115-201ENST00000636045 103 ntBASIC2.57□□□□□ -2
CHMP4CQ96CF2 Y_RNA.19-201ENST00000362462 99 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 RNU6-770P-201ENST00000363929 105 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 Y_RNA.331-201ENST00000365267 102 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 Y_RNA.446-201ENST00000384178 104 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 RNU4-52P-201ENST00000384209 138 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 MIR1289-2-201ENST00000408360 111 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 ELOCP20-201ENST00000422460 345 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.56□□□□□ -2
CHMP4CQ96CF2 RNU1-40P-201ENST00000516816 164 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 RNU1-97P-201ENST00000516872 164 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 RNU2-12P-201ENST00000517216 168 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 AC136932.1-201ENST00000574771 208 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 MIR1273D-201ENST00000577266 86 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 AC008749.1-201ENST00000597650 306 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 AL353149.1-201ENST00000610667 244 ntBASIC2.56□□□□□ -2
CHMP4CQ96CF2 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 RNU6-324P-201ENST00000363957 106 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 Y_RNA.214-201ENST00000364201 112 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 RNA5SP450-201ENST00000411206 102 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 MTATP8P1-201ENST00000467115 207 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 AC055731.1-201ENST00000474387 401 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 SCARNA16.3-201ENST00000516595 184 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms