Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU1-101P-201ENST00000391171 127 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 RNU4-53P-201ENST00000410828 140 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 AC009969.1-201ENST00000438726 172 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 SNORD116-25-201ENST00000516517 92 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 RNU7-121P-201ENST00000516604 62 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 MIR4431-201ENST00000579990 94 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 U4.3-201ENST00000621047 82 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.87
USHBP1Q8N6Y0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
USHBP1Q8N6Y0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
USHBP1Q8N6Y0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.34□□□□□ -1.88
USHBP1Q8N6Y0 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.34□□□□□ -1.88
USHBP1Q8N6Y0 AC092435.3-201ENST00000565538 3654 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1027P-201ENST00000383998 107 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 MIR548B-201ENST00000385247 97 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 AL355497.1-201ENST00000406262 551 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 RN7SL636P-201ENST00000497504 294 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-479P-201ENST00000516348 105 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 AC069294.1-201ENST00000608397 350 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 Y_RNA.802-201ENST00000614892 130 ntBASIC3.33□□□□□ -1.88
USHBP1Q8N6Y0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 snoU2_19.4-201ENST00000364329 80 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-417P-201ENST00000384712 107 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 Y_RNA.586-201ENST00000391146 98 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-855P-201ENST00000410395 104 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 AC010409.1-201ENST00000487382 476 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 SNORA70.12-201ENST00000516084 153 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 RNA5SP380-201ENST00000517190 98 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 MIR5688-201ENST00000580619 83 ntBASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
USHBP1Q8N6Y0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 Y_RNA.24-201ENST00000362508 103 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1048P-201ENST00000364054 107 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1305P-201ENST00000364353 104 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 RNU4-10P-201ENST00000364383 140 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 Y_RNA.310-201ENST00000365063 113 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 SNORA12-201ENST00000391162 147 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AC097463.2-201ENST00000421074 142 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-313P-201ENST00000516317 112 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AC022616.8-201ENST00000533569 253 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 MIR548X2-201ENST00000579776 100 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 AC008873.1-201ENST00000625051 138 ntBASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.31□□□□□ -1.88
USHBP1Q8N6Y0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 MAPK10-266ENST00000641066 6555 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-818P-201ENST00000364837 108 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 Y_RNA.361-201ENST00000365515 120 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-376P-201ENST00000384731 106 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 MIR586-201ENST00000385035 97 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1154P-201ENST00000391001 104 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 snoU13.26-201ENST00000459452 105 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC234781.5-201ENST00000508429 271 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-426P-201ENST00000516464 97 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC008739.2-201ENST00000597006 317 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC046143.2-201ENST00000609789 160 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC068700.1-201ENST00000565862 3754 ntBASIC3.3□□□□□ -1.88
USHBP1Q8N6Y0 AC091564.4-201ENST00000533934 2194 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1290P-201ENST00000362957 109 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 CD24P4-201ENST00000382840 243 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-144P-201ENST00000383951 107 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 MIR592-201ENST00000384959 97 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 MIR526A2-201ENST00000390198 65 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 RN7SKP223-201ENST00000410582 62 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 AC107027.2-201ENST00000512197 115 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 AL670379.2-201ENST00000604983 252 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 MIR7843-201ENST00000622274 79 ntBASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USHBP1Q8N6Y0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 SNORD114-7-201ENST00000362520 77 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 RNU1-105P-201ENST00000363470 161 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 RNU6-1205P-201ENST00000363625 106 ntBASIC3.28□□□□□ -1.88
USHBP1Q8N6Y0 SNORD32B-201ENST00000364460 84 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms