Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SNORD116-28-201ENST00000516123 91 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 RNU6-566P-201ENST00000516790 107 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 Y_RNA.706-201ENST00000516933 99 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 RNU1-54P-201ENST00000517181 120 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 MIR4778-201ENST00000577635 80 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 AC027335.2-201ENST00000624030 375 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 AC068137.4-201ENST00000638485 296 ntBASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
NUDCD3Q8IVD9 Y_RNA.106-201ENST00000363189 100 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 RNU4-38P-201ENST00000364472 129 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 RNU4-76P-201ENST00000364509 141 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 RNU4-12P-201ENST00000365233 139 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-1013P-201ENST00000384180 107 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.490-201ENST00000384413 102 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 MTND4LP16-201ENST00000440828 295 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 MTATP6P26-201ENST00000445926 662 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC087343.1-201ENST00000477341 475 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC010598.1-201ENST00000510378 103 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 CBX3P8-201ENST00000532412 525 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC093023.1-201ENST00000547375 507 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AL162424.1-201ENST00000602325 221 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC100812.1-201ENST00000607622 580 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 AC006435.5-201ENST00000624486 112 ntBASIC0.96□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.157-201ENST00000363638 102 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 RNU1-124P-201ENST00000363861 145 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.295-201ENST00000364918 102 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-1001P-201ENST00000411265 100 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 AC097462.1-201ENST00000514125 324 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 AL513534.2-201ENST00000603836 250 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 MIR6079-201ENST00000635807 62 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 MIR3662-201ENST00000637030 95 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 MTND5P16-201ENST00000460269 1703 ntBASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
NUDCD3Q8IVD9 SNORA20B-201ENST00000384220 132 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 AL355796.1-201ENST00000406706 323 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 RAB28P5-201ENST00000427490 651 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 SNORD5.1-201ENST00000458800 75 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 AC018710.1-201ENST00000506509 158 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 RNU7-172P-201ENST00000517125 64 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 EIF1P4-201ENST00000572664 335 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 MIR3124-201ENST00000582636 67 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 AC125232.2-201ENST00000592457 143 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.3-201ENST00000362331 103 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.301-201ENST00000364990 103 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.338-201ENST00000365320 114 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.473-201ENST00000384333 102 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.573-201ENST00000384763 105 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 MIR222-201ENST00000384992 110 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RNA5SP118-201ENST00000410385 109 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 MTCO3P19-201ENST00000415864 321 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 AL589823.1-201ENST00000429577 183 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 CALM2P4-201ENST00000430810 426 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RPS29P25-201ENST00000481709 171 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 UBL5P1-201ENST00000507979 193 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 AC046134.1-201ENST00000514454 666 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 SNORA31.2-201ENST00000516019 134 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RNU4-49P-201ENST00000516080 140 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-720P-201ENST00000516363 108 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RNA5SP168-201ENST00000516642 112 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 CYCSP23-201ENST00000519781 313 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 MIR4790-201ENST00000577799 79 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 AL020996.3-201ENST00000606617 222 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 SNORA28-201ENST00000606769 126 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 AC012676.2-201ENST00000619258 186 ntBASIC0.93□□□□□ -2.26
NUDCD3Q8IVD9 RNU6-199P-201ENST00000362954 107 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 Y_RNA.265-201ENST00000364677 108 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 MIR329-1-201ENST00000385028 80 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 SNORD41-201ENST00000386967 70 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 U8.16-201ENST00000391279 133 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 EIF1P2-201ENST00000428233 350 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 HSPE1P13-201ENST00000451143 297 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AC091021.1-201ENST00000468051 388 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AC048334.1-201ENST00000477975 159 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AC105758.1-201ENST00000506038 399 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 SNORA70.22-201ENST00000517160 124 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AC090617.3-201ENST00000573670 475 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AL359821.1-201ENST00000605519 182 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 GHRLOS.1-201ENST00000610995 70 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AC093913.1-201ENST00000614178 329 ntBASIC0.92□□□□□ -2.26
NUDCD3Q8IVD9 AL357075.2-201ENST00000614906 189 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms