Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU7-172P-201ENST00000517125 64 ntBASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
UBE3DQ7Z6J8 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RNY1P11-201ENST00000363759 113 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.634-201ENST00000364811 113 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 MIR562-201ENST00000384894 95 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 MIR520G-201ENST00000385064 90 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 SNORA48.7-201ENST00000391302 135 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RNA5SP229-201ENST00000410809 99 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 MTCO1P44-201ENST00000441935 243 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RPS4XP11-201ENST00000446897 772 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 CYCSP35-201ENST00000451978 304 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 AP001486.1-201ENST00000463339 476 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-1146P-201ENST00000516282 102 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-856P-201ENST00000516959 98 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 RPL23AP91-201ENST00000569211 455 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 MIR4276-201ENST00000584832 70 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 AL929325.1-201ENST00000603096 117 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 uc_338.1-201ENST00000612113 180 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
UBE3DQ7Z6J8 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 SNORD18B-201ENST00000365659 72 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 MIR670-201ENST00000390142 98 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 AL603914.1-201ENST00000401964 204 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 RN7SKP27-201ENST00000410684 333 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 RNU2-32P-201ENST00000411193 191 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 AC123900.1-201ENST00000420390 96 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 AL158147.1-201ENST00000443970 75 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-772P-201ENST00000516042 105 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 SNORA48.11-201ENST00000517015 89 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 MIR3121-201ENST00000579680 77 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 AL356280.1-201ENST00000603614 379 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 MIR7975-201ENST00000619350 68 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 XIST_intron.1-201ENST00000619444 68 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 MIR1248-201ENST00000629190 106 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 PWAR6-201ENST00000552334 4618 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 AC138915.1-201ENST00000565427 1685 ntBASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
UBE3DQ7Z6J8 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.332-201ENST00000365271 113 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 RNA5SP171-201ENST00000391071 115 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 RNY4P18-201ENST00000391107 89 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 SNORA11-201ENST00000408789 128 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AL161788.1-201ENST00000441805 169 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AC025750.2-201ENST00000442609 450 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 RPL21P10-201ENST00000463521 490 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 OR9P1P-201ENST00000496431 281 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 PDCD5P2-201ENST00000507570 312 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AC093259.1-201ENST00000509755 300 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.709-201ENST00000516952 92 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AC011604.1-201ENST00000545978 196 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 U6.73-201ENST00000619194 103 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 AC002064.3-201ENST00000623448 346 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 Z83843.1-201ENST00000604070 3685 ntBASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
UBE3DQ7Z6J8 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.796-201ENST00000364268 102 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-755P-201ENST00000364400 103 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.242-201ENST00000364473 110 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 SNORA68.1-201ENST00000364537 132 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 Y_RNA.799-201ENST00000364992 102 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 MIR591-201ENST00000385290 95 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 FO393413.1-201ENST00000402892 195 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 HMGN1P18-201ENST00000457642 277 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 AC091153.1-201ENST00000466297 402 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 SCARNA20.6-201ENST00000517251 106 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 AL365205.2-201ENST00000594586 68 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 AC008739.3-201ENST00000603262 127 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 JPX_2.1-201ENST00000614161 69 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 MIR6075-201ENST00000620782 95 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 SNORA50A-202ENST00000629536 136 ntBASIC3.11□□□□□ -1.91
UBE3DQ7Z6J8 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 U8.1-201ENST00000362843 134 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-1209P-201ENST00000363655 107 ntBASIC3.1□□□□□ -1.91
UBE3DQ7Z6J8 RNU6-647P-201ENST00000364243 107 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 189.4 ms