Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.18□□□□□ -1.9
CNKSR3Q6P9H4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 SNORA18.2-201ENST00000383865 132 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 RNU6-748P-201ENST00000384648 107 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 RNU6-1228P-201ENST00000391014 107 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 AIMP1P2-201ENST00000425294 312 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 SNORD109B-201ENST00000458961 67 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 SNORD109A-201ENST00000459128 67 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 CYCSP26-201ENST00000534107 320 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 AC079600.2-201ENST00000550076 130 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 EIF4A1P12-201ENST00000551910 141 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 MIR5688-201ENST00000580619 83 ntBASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.17□□□□□ -1.9
CNKSR3Q6P9H4 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 RNU6-476P-201ENST00000384726 107 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 MIR196B-201ENST00000384852 84 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 RNU6-383P-201ENST00000410864 94 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 CYCSP49-201ENST00000420810 319 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 TOMM22P2-201ENST00000430735 237 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 MRPS36P2-201ENST00000512569 299 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 RNA5SP76-201ENST00000516277 87 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 MIR4425-201ENST00000580572 84 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 MIR5006-201ENST00000583027 110 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 AC023043.3-201ENST00000593113 385 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 U7.2-201ENST00000607576 63 ntBASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.16□□□□□ -1.9
CNKSR3Q6P9H4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
CNKSR3Q6P9H4 Y_RNA.294-201ENST00000364916 102 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 Y_RNA.393-201ENST00000383936 102 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-1144P-201ENST00000384247 104 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 snoU13.14-201ENST00000459372 104 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 Y_RNA.709-201ENST00000516952 92 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 Y_RNA.712-201ENST00000517011 92 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 AC105137.2-201ENST00000569073 466 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 MIR4679-1-201ENST00000637619 75 ntBASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-1082P-201ENST00000364574 107 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 U8.7-201ENST00000364940 136 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-915P-201ENST00000364943 103 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-728P-201ENST00000365375 104 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNA5SP508-201ENST00000411327 119 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AL158823.1-201ENST00000418441 478 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 HSPE1P13-201ENST00000451143 297 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 SEM1P1-201ENST00000506694 209 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RN7SKP179-201ENST00000516126 217 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNU2-44P-201ENST00000516795 194 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RNA5SP170-201ENST00000517150 101 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 MIR4724-201ENST00000579485 89 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 MIR3613-201ENST00000579844 87 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 RPS15AP11-201ENST00000594193 385 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AL670379.2-201ENST00000604983 252 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AC025754.2-201ENST00000606491 432 ntBASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.14□□□□□ -1.91
CNKSR3Q6P9H4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-1255P-201ENST00000363434 112 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 U3.9-201ENST00000363823 204 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-755P-201ENST00000364400 103 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 Y_RNA.521-201ENST00000384560 114 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 MIR548B-201ENST00000385247 97 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RNA5SP274-201ENST00000410484 108 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RPL32P35-201ENST00000415214 394 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RPS27P1-201ENST00000450552 247 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 AC145146.1-201ENST00000496370 254 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-589P-201ENST00000516485 107 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 AC090049.2-201ENST00000550377 109 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 AC091544.4-201ENST00000555268 342 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 MTND5P32-201ENST00000560711 1802 ntBASIC3.13□□□□□ -1.91
CNKSR3Q6P9H4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CNKSR3Q6P9H4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CNKSR3Q6P9H4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CNKSR3Q6P9H4 RNU6-235P-201ENST00000362644 107 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms