Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC012557.2-201ENST00000605919 418 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AL021879.1-201ENST00000611756 288 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AC006435.5-201ENST00000624486 112 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AC100810.6-201ENST00000638068 285 ntBASIC0.98□□□□□ -2.25
TRIM40Q6P9F5 AC018630.2-201ENST00000534866 2403 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 RNU6-1059P-201ENST00000363752 98 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 USP9YP30-201ENST00000430729 455 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AC092991.1-201ENST00000477176 376 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 Y_RNA.706-201ENST00000516933 99 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 RNU6-165P-201ENST00000517170 99 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AC100812.1-201ENST00000607622 580 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AL133216.2-202ENST00000634512 349 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AC068647.2-201ENST00000637380 353 ntBASIC0.97□□□□□ -2.25
TRIM40Q6P9F5 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-623P-201ENST00000363143 105 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.238-201ENST00000364441 102 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-281P-201ENST00000384212 103 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-842P-201ENST00000384269 107 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-505P-201ENST00000384427 107 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.573-201ENST00000384763 105 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 MIR660-201ENST00000385235 97 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RPL37P10-201ENST00000412884 288 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 USP9YP16-201ENST00000430287 407 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 USP9YP23-201ENST00000455085 407 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 SNORD5.1-201ENST00000458800 75 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RPS27P22-201ENST00000478056 241 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-720P-201ENST00000516363 108 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-107P-201ENST00000516643 102 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC023157.2-201ENST00000540596 141 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 AC073349.3-201ENST00000617616 186 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 SNORD3E-202ENST00000627253 216 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 MIR3662-201ENST00000637030 95 ntBASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
TRIM40Q6P9F5 RNU6-222P-201ENST00000362438 107 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 RNU4-38P-201ENST00000364472 129 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.295-201ENST00000364918 102 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 SNORA25.9-201ENST00000365087 128 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 RNU4-12P-201ENST00000365233 139 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 MIR1276-201ENST00000408707 83 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 RPS29P25-201ENST00000481709 171 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC010469.2-201ENST00000496412 480 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC105313.1-201ENST00000509121 353 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC010598.1-201ENST00000510378 103 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 RNA5SP404-201ENST00000517118 132 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC027419.1-201ENST00000522976 328 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC093023.1-201ENST00000547375 507 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 MIR6128-201ENST00000615528 109 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 U4.5-201ENST00000617137 123 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 AC027335.2-201ENST00000624030 375 ntBASIC0.95□□□□□ -2.26
TRIM40Q6P9F5 SNORA22-201ENST00000383907 134 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 SNORA70.7-201ENST00000384159 133 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 SNORA25-201ENST00000384384 134 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 SNORA22C-201ENST00000384614 134 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 MTCO3P19-201ENST00000415864 321 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AL139396.1-201ENST00000421137 167 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 STAG3L5P-204ENST00000443759 179 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AC097462.1-201ENST00000514125 324 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 CBX3P8-201ENST00000532412 525 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AL513534.2-201ENST00000603836 250 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AL022345.2-201ENST00000606307 135 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 SNORA28-201ENST00000606769 126 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 AC106754.2-201ENST00000623006 233 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 MIR6079-201ENST00000635807 62 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.94□□□□□ -2.26
TRIM40Q6P9F5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.3-201ENST00000362331 103 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.48-201ENST00000362710 103 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.106-201ENST00000363189 100 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 SNORD114-27-201ENST00000363766 70 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 RNU4-76P-201ENST00000364509 141 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.301-201ENST00000364990 103 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 RNU11-5P-201ENST00000391216 129 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 RNU6-1001P-201ENST00000411265 100 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 RAB28P5-201ENST00000427490 651 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 DYNLT3P2-201ENST00000442517 295 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AC046134.1-201ENST00000514454 666 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 SNORD116-28-201ENST00000516123 91 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 RNU6-922P-201ENST00000516753 99 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AL121579.1-201ENST00000555129 305 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AC090617.3-201ENST00000573670 475 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 MIR4790-201ENST00000577799 79 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AC125232.2-201ENST00000592457 143 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 BX284668.6-201ENST00000606899 438 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 AC093913.1-201ENST00000614178 329 ntBASIC0.93□□□□□ -2.26
TRIM40Q6P9F5 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms