Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.02□□□□□ -2.09
USP41Q3LFD5 AL109918.3-201ENST00000603072 338 ntBASIC2.02□□□□□ -2.09
USP41Q3LFD5 Y_RNA.202-201ENST00000364083 110 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 MIR17-201ENST00000385012 84 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 MRPL42P3-201ENST00000401492 326 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 RNA5SP450-201ENST00000411206 102 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 AC060773.1-201ENST00000421698 310 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 RAB28P5-201ENST00000427490 651 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 TOMM22P2-201ENST00000430735 237 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 MTCYBP6-201ENST00000441810 138 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 RNU6-221P-201ENST00000459541 99 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 RNU6-1012P-201ENST00000516606 109 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 SUMO2P18-201ENST00000518873 252 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 AC040926.1-201ENST00000530195 238 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.01□□□□□ -2.09
USP41Q3LFD5 AC240442.1-201ENST00000616055 283 ntBASIC2.01□□□□□ -2.09
USP41Q3LFD5 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2□□□□□ -2.09
USP41Q3LFD5 RNU6-961P-201ENST00000363893 105 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 Y_RNA.526-201ENST00000384572 110 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 RNU2-20P-201ENST00000410425 191 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 RNA5SP475-201ENST00000410568 110 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC008134.1-201ENST00000420943 193 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC003989.2-201ENST00000440224 169 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2□□□□□ -2.09
USP41Q3LFD5 ATP5J2P3-201ENST00000451550 258 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2□□□□□ -2.09
USP41Q3LFD5 AC107393.1-201ENST00000512403 346 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC011406.1-201ENST00000512440 370 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 RNA5SP364-201ENST00000516938 78 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC025647.1-201ENST00000517879 253 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2□□□□□ -2.09
USP41Q3LFD5 AL390123.1-201ENST00000603216 237 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AP000942.3-201ENST00000603702 160 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC124312.5-201ENST00000604451 268 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 AC016925.2-201ENST00000605108 242 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 DLEU2_2.2-201ENST00000615474 90 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 MIR3674-201ENST00000636576 68 ntBASIC2□□□□□ -2.09
USP41Q3LFD5 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
USP41Q3LFD5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2□□□□□ -2.09
USP41Q3LFD5 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.99□□□□□ -2.09
USP41Q3LFD5 AC008555.8-201ENST00000623602 2168 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 RNA5SP276-201ENST00000362580 94 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 RNU6-1266P-201ENST00000362794 105 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 Y_RNA.140-201ENST00000363474 103 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 RNU6-450P-201ENST00000364654 107 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 Y_RNA.389-201ENST00000383924 113 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 MIR1253-201ENST00000408273 105 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
USP41Q3LFD5 SDAD1P3-201ENST00000427380 333 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.99□□□□□ -2.09
USP41Q3LFD5 RN7SL274P-201ENST00000492268 272 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.99□□□□□ -2.09
USP41Q3LFD5 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.99□□□□□ -2.09
USP41Q3LFD5 AC012493.3-201ENST00000604494 112 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.99□□□□□ -2.09
USP41Q3LFD5 CENPCP1-201ENST00000533085 2578 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 Y_RNA.471-201ENST00000384312 102 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 RNU6-1011P-201ENST00000384668 107 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 Y_RNA.645-201ENST00000391229 102 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC016909.1-201ENST00000415916 166 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 HMGN2P34-201ENST00000437647 269 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 MTND2P29-201ENST00000438595 412 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 RPL26P26-201ENST00000480251 434 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC093852.1-201ENST00000503587 266 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AP002001.1-203ENST00000534002 267 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC005786.1-201ENST00000588553 154 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC008749.1-201ENST00000597650 306 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC104695.3-201ENST00000604052 296 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 AC040896.1-201ENST00000613819 479 ntBASIC1.98□□□□□ -2.09
USP41Q3LFD5 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
USP41Q3LFD5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
USP41Q3LFD5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
USP41Q3LFD5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-862P-201ENST00000362804 105 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-626P-201ENST00000363354 107 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU4-50P-201ENST00000364361 141 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 SNORA72.2-201ENST00000365028 127 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-1240P-201ENST00000365155 104 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-20P-201ENST00000384106 107 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-1310P-201ENST00000384153 107 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 Y_RNA.458-201ENST00000384240 102 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 MIR9-3-201ENST00000385084 90 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 MRPL35P1-201ENST00000404272 572 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 AL512604.1-201ENST00000404812 257 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNU6-101P-201ENST00000410323 104 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 RNA5SP501-201ENST00000410990 112 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 AC096920.1-201ENST00000423991 241 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 AL353689.1-201ENST00000438895 199 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 SNORA25.15-201ENST00000516487 89 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.97□□□□□ -2.09
USP41Q3LFD5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.97□□□□□ -2.09
USP41Q3LFD5 AL121655.1-201ENST00000605811 308 ntBASIC1.97□□□□□ -2.09
USP41Q3LFD5 Y_RNA.772-201ENST00000606692 102 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 137.7 ms