Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXC1Q12948 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXC1Q12948 AC242852.1-201ENST00000612151 96 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 MIR8058-201ENST00000615737 89 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 AC244015.1-201ENST00000622301 99 ntBASIC3.81□□□□□ -1.8
FOXC1Q12948 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXC1Q12948 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXC1Q12948 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.8□□□□□ -1.8
FOXC1Q12948 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXC1Q12948 RNU6-268P-201ENST00000364174 107 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 RNU6-616P-201ENST00000384353 107 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 RNU6-1274P-201ENST00000384557 107 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 RAC1P2-201ENST00000511164 579 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 Y_RNA.714-201ENST00000517065 90 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 AP003484.1-201ENST00000530974 250 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 MIR432-201ENST00000606207 94 ntBASIC3.8□□□□□ -1.8
FOXC1Q12948 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
FOXC1Q12948 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
FOXC1Q12948 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
FOXC1Q12948 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXC1Q12948 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXC1Q12948 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXC1Q12948 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXC1Q12948 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXC1Q12948 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
FOXC1Q12948 RNA5SP50-201ENST00000363731 107 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 RNA5SP151-201ENST00000365632 117 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 MIR1271-201ENST00000408537 86 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 AP002884.2-201ENST00000471647 395 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 AC114801.3-201ENST00000510231 177 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 RNU7-99P-201ENST00000516271 62 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXC1Q12948 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 AC090517.3-201ENST00000625170 141 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXC1Q12948 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXC1Q12948 AL353746.1-201ENST00000566293 6881 ntBASIC3.79□□□□□ -1.8
FOXC1Q12948 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXC1Q12948 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC3.79□□□□□ -1.8
FOXC1Q12948 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXC1Q12948 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXC1Q12948 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
FOXC1Q12948 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXC1Q12948 MAPK10-303ENST00000641324 3959 ntBASIC3.78□□□□□ -1.8
FOXC1Q12948 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXC1Q12948 RN7SKP200-201ENST00000410564 320 ntBASIC3.78□□□□□ -1.8
FOXC1Q12948 RNU6-341P-201ENST00000516973 96 ntBASIC3.78□□□□□ -1.8
FOXC1Q12948 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.78□□□□□ -1.8
FOXC1Q12948 AC140113.4-201ENST00000622087 222 ntBASIC3.78□□□□□ -1.8
FOXC1Q12948 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC3.78□□□□□ -1.8
FOXC1Q12948 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
FOXC1Q12948 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXC1Q12948 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXC1Q12948 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXC1Q12948 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
FOXC1Q12948 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
FOXC1Q12948 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 SNORA31-201ENST00000362607 130 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 RNA5SP189-201ENST00000364920 115 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 Y_RNA.299-201ENST00000364973 94 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 RNU6-442P-201ENST00000383968 104 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 RNU1-44P-201ENST00000384453 163 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 AP000873.1-201ENST00000463987 400 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXC1Q12948 RNA5SP446-201ENST00000515955 82 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 SNORA18.7-201ENST00000516910 131 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXC1Q12948 AC244505.7-201ENST00000599675 272 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
FOXC1Q12948 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 AL049781.1-201ENST00000623195 3585 ntBASIC3.77□□□□□ -1.81
FOXC1Q12948 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXC1Q12948 AC006504.1-201ENST00000562493 3666 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXC1Q12948 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXC1Q12948 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXC1Q12948 Y_RNA.545-201ENST00000384652 105 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 MIR490-201ENST00000384865 128 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
FOXC1Q12948 AL022718.1-201ENST00000412004 84 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 AC087499.4-201ENST00000448505 178 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 HMGN2P18-201ENST00000450680 270 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 ELOCP29-201ENST00000588193 334 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.76□□□□□ -1.81
FOXC1Q12948 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXC1Q12948 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXC1Q12948 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms