Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX4Q06945 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.36□□□□□ -1.87
SOX4Q06945 RNU6-234P-201ENST00000365229 104 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 SNORD18B-201ENST00000365659 72 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 SNORA72-201ENST00000384339 132 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 SNORD67-201ENST00000390833 111 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.36□□□□□ -1.87
SOX4Q06945 ATP5EP1-201ENST00000510257 156 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 RNA5SP153-201ENST00000516498 76 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 AC103810.1-201ENST00000579873 453 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 MIR4765-201ENST00000585007 77 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 AL929325.1-201ENST00000603096 117 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 MIR4679-1-201ENST00000637619 75 ntBASIC3.36□□□□□ -1.87
SOX4Q06945 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SOX4Q06945 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.36□□□□□ -1.87
SOX4Q06945 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX4Q06945 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
SOX4Q06945 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
SOX4Q06945 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SOX4Q06945 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX4Q06945 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SOX4Q06945 RNU6-117P-201ENST00000365415 107 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 RNU6-136P-201ENST00000384663 107 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 MIR184-201ENST00000384962 84 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 RNU2-70P-201ENST00000410718 179 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.35□□□□□ -1.87
SOX4Q06945 RPL39P40-201ENST00000445481 146 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 RNU6-948P-201ENST00000516374 107 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 AC025647.1-201ENST00000517879 253 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 uc_338.4-201ENST00000616635 176 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.35□□□□□ -1.87
SOX4Q06945 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.35□□□□□ -1.87
SOX4Q06945 AP003122.5-201ENST00000527668 3766 ntBASIC3.35□□□□□ -1.87
SOX4Q06945 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
SOX4Q06945 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.34□□□□□ -1.87
SOX4Q06945 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SOX4Q06945 AL353746.1-201ENST00000566293 6881 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX4Q06945 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SOX4Q06945 AC103988.1-201ENST00000566382 2177 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 SNORD31B-201ENST00000364977 69 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 SNORD116-21-201ENST00000384507 92 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 SNORA44-201ENST00000384584 132 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 MIR548A3-201ENST00000385297 97 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 AL603914.1-201ENST00000401964 204 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 HMGN1P18-201ENST00000457642 277 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 AL031183.1-201ENST00000457667 207 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.34□□□□□ -1.87
SOX4Q06945 RNU1-143P-201ENST00000516296 146 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 Y_RNA.690-201ENST00000516603 95 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 RMST_8.1-201ENST00000610287 165 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 U1.23-201ENST00000610293 146 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 RNU1-68P-201ENST00000615382 146 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.34□□□□□ -1.87
SOX4Q06945 U1.39-201ENST00000621562 146 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 AC006435.5-201ENST00000624486 112 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 MIR622-201ENST00000638396 96 ntBASIC3.34□□□□□ -1.87
SOX4Q06945 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.34□□□□□ -1.88
SOX4Q06945 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SOX4Q06945 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SOX4Q06945 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.33□□□□□ -1.88
SOX4Q06945 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SOX4Q06945 Y_RNA.91-201ENST00000363042 107 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RNU6-944P-201ENST00000364023 107 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 Y_RNA.634-201ENST00000364811 113 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 Y_RNA.309-201ENST00000365046 111 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 SNORD58C-201ENST00000365223 64 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 MIR767-201ENST00000390228 109 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RNA5SP89-201ENST00000410300 108 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RN7SKP220-201ENST00000410611 288 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.33□□□□□ -1.88
SOX4Q06945 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.33□□□□□ -1.88
SOX4Q06945 AC023449.1-201ENST00000454464 154 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 SNORD77.4-201ENST00000516158 81 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RNU6-168P-201ENST00000516189 101 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RNU2-60P-201ENST00000517290 128 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 EIF4BP1-201ENST00000554881 351 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 RPL23AP91-201ENST00000569211 455 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 MIR2681-201ENST00000581814 105 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 AL033523.1-201ENST00000605153 153 ntBASIC3.33□□□□□ -1.88
SOX4Q06945 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
SOX4Q06945 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.32□□□□□ -1.88
SOX4Q06945 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SOX4Q06945 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.32□□□□□ -1.88
SOX4Q06945 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SOX4Q06945 Y_RNA.35-201ENST00000362601 101 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNU6-508P-201ENST00000363231 103 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 Y_RNA.203-201ENST00000364106 102 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNU6-647P-201ENST00000364243 107 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNU6-309P-201ENST00000364573 106 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNU6-418P-201ENST00000384035 107 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNU6-1274P-201ENST00000384557 107 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 SNORD15B-201ENST00000384714 146 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 Y_RNA.617-201ENST00000410920 90 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RPS27P22-201ENST00000478056 241 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 RNA5SP112-201ENST00000515937 99 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 SNORA31.1-201ENST00000515993 133 ntBASIC3.32□□□□□ -1.88
SOX4Q06945 SNORA31.5-201ENST00000516190 133 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms