Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR3684-201ENST00000579779 74 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 ZNF861P-201ENST00000588126 639 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 AC090115.4-201ENST00000609970 188 ntBASIC2.33□□□□□ -2.04
HOXA4Q00056 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXA4Q00056 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXA4Q00056 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
HOXA4Q00056 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA4Q00056 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXA4Q00056 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXA4Q00056 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXA4Q00056 SNORD116-13-201ENST00000384408 92 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 Y_RNA.506-201ENST00000384494 102 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 EEF1B2P7-201ENST00000451177 676 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 AL137159.1-201ENST00000452808 512 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 RNU7-141P-201ENST00000459304 62 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 RNU6-1219P-201ENST00000516143 112 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 RNU6-346P-201ENST00000516288 111 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 AL137100.2-201ENST00000555786 315 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 GTF3AP2-201ENST00000557014 266 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXA4Q00056 MIR3910-1-201ENST00000580936 111 ntBASIC2.32□□□□□ -2.04
HOXA4Q00056 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXA4Q00056 AC138915.1-201ENST00000565427 1685 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXA4Q00056 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HOXA4Q00056 MIR340-201ENST00000362125 95 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 SNORD114-7-201ENST00000362520 77 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 Y_RNA.332-201ENST00000365271 113 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RNU6-407P-201ENST00000365280 104 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 Y_RNA.464-201ENST00000384282 110 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 Y_RNA.572-201ENST00000384757 98 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 MIR592-201ENST00000384959 97 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 AL138827.1-201ENST00000402666 306 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RN7SKP123-201ENST00000410732 291 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 AC123900.1-201ENST00000420390 96 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA4Q00056 AC105272.1-201ENST00000438604 198 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 AL445687.1-201ENST00000439946 251 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RPS20P10-201ENST00000451209 253 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RNA5SP20-201ENST00000515976 84 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 Y_RNA.662-201ENST00000516028 97 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RNA5SP367-201ENST00000516557 118 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 RNU6-667P-201ENST00000517186 102 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXA4Q00056 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXA4Q00056 U6.106-201ENST00000636360 105 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
HOXA4Q00056 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.31□□□□□ -2.04
HOXA4Q00056 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
HOXA4Q00056 FAM35CP-201ENST00000554755 2470 ntBASIC2.31□□□□□ -2.04
HOXA4Q00056 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXA4Q00056 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HOXA4Q00056 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HOXA4Q00056 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXA4Q00056 AL356292.1-201ENST00000283110 373 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 Y_RNA.170-201ENST00000363746 110 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU6-899P-201ENST00000363947 107 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 Y_RNA.293-201ENST00000364908 93 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U8.7-201ENST00000364940 136 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU6-1240P-201ENST00000365155 104 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HOXA4Q00056 AL590004.2-201ENST00000404787 371 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU2-2P-201ENST00000410396 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 AC117454.1-201ENST00000491120 168 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXA4Q00056 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU6-63P-201ENST00000516690 95 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 AC100767.1-201ENST00000528178 123 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 AC021269.2-201ENST00000532318 330 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 MRPS18CP4-201ENST00000535821 231 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU2-4P-201ENST00000606190 192 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.15-201ENST00000611544 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 MIR7106-201ENST00000612419 65 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.16-201ENST00000613119 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.12-201ENST00000613778 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.9-201ENST00000615427 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.11-201ENST00000616345 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.2-201ENST00000616535 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.3-201ENST00000617785 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.19-201ENST00000618602 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 RNU2-1-201ENST00000618664 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.6-201ENST00000619225 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.5-201ENST00000619465 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 U2.10-201ENST00000620268 191 ntBASIC2.3□□□□□ -2.04
HOXA4Q00056 AL355596.1-201ENST00000565399 3996 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXA4Q00056 Y_RNA.240-201ENST00000364469 95 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 SNORA25B-201ENST00000365507 128 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 Y_RNA.435-201ENST00000384095 112 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 Y_RNA.571-201ENST00000384753 98 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 MIR627-201ENST00000384979 97 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 SNORD88.1-201ENST00000408684 91 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 RNA5SP344-201ENST00000411081 104 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 HSPE1P21-201ENST00000438283 308 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 RPS26P55-201ENST00000471178 356 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXA4Q00056 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 RNU6-1212P-201ENST00000517023 104 ntBASIC2.29□□□□□ -2.04
HOXA4Q00056 MIR4319-201ENST00000577285 85 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms