Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.04□□□□□ -1.92
MRE11P49959 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MRE11P49959 RNU6-1264P-201ENST00000383891 107 ntBASIC3.04□□□□□ -1.92
MRE11P49959 AC092427.1-202ENST00000430569 476 ntBASIC3.04□□□□□ -1.92
MRE11P49959 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.04□□□□□ -1.92
MRE11P49959 RNU6-1053P-201ENST00000515930 101 ntBASIC3.04□□□□□ -1.92
MRE11P49959 RNY3P16-201ENST00000516338 101 ntBASIC3.04□□□□□ -1.92
MRE11P49959 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
MRE11P49959 MIR5092-201ENST00000583139 88 ntBASIC3.04□□□□□ -1.92
MRE11P49959 MIR3133-201ENST00000583157 78 ntBASIC3.04□□□□□ -1.92
MRE11P49959 SNORD11B-201ENST00000607707 90 ntBASIC3.04□□□□□ -1.92
MRE11P49959 uc_338.14-201ENST00000613162 166 ntBASIC3.04□□□□□ -1.92
MRE11P49959 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.03□□□□□ -1.92
MRE11P49959 RNU6-454P-201ENST00000364292 107 ntBASIC3.03□□□□□ -1.92
MRE11P49959 Y_RNA.233-201ENST00000364407 101 ntBASIC3.03□□□□□ -1.92
MRE11P49959 SNORD87-201ENST00000364849 89 ntBASIC3.03□□□□□ -1.92
MRE11P49959 SNORA18.2-201ENST00000383865 132 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RNU6-187P-201ENST00000384139 106 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RNA5SP504-201ENST00000410676 117 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RN7SKP51-201ENST00000410781 304 ntBASIC3.03□□□□□ -1.92
MRE11P49959 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.03□□□□□ -1.92
MRE11P49959 HMGN2P3-201ENST00000433603 273 ntBASIC3.03□□□□□ -1.92
MRE11P49959 HMGN2P5-201ENST00000436882 273 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RPL36AP48-201ENST00000485521 314 ntBASIC3.03□□□□□ -1.92
MRE11P49959 AC108729.3-201ENST00000513484 108 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RNU6-107P-201ENST00000516643 102 ntBASIC3.03□□□□□ -1.92
MRE11P49959 RNU2-12P-201ENST00000517216 168 ntBASIC3.03□□□□□ -1.92
MRE11P49959 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.03□□□□□ -1.92
MRE11P49959 MIR4648-201ENST00000580107 72 ntBASIC3.03□□□□□ -1.92
MRE11P49959 snoU18.1-201ENST00000629629 71 ntBASIC3.03□□□□□ -1.92
MRE11P49959 U6.106-201ENST00000636360 105 ntBASIC3.03□□□□□ -1.92
MRE11P49959 U2.22-201ENST00000636441 106 ntBASIC3.03□□□□□ -1.92
MRE11P49959 AC096644.4-201ENST00000563417 2912 ntBASIC3.03□□□□□ -1.92
MRE11P49959 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
MRE11P49959 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
MRE11P49959 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MRE11P49959 AC069528.2-201ENST00000624849 1991 ntBASIC3.02□□□□□ -1.93
MRE11P49959 AL157777.2-201ENST00000258070 137 ntBASIC3.02□□□□□ -1.93
MRE11P49959 snoU2_19.1-201ENST00000362361 80 ntBASIC3.02□□□□□ -1.93
MRE11P49959 Y_RNA.304-201ENST00000365011 112 ntBASIC3.02□□□□□ -1.93
MRE11P49959 Y_RNA.308-201ENST00000365043 101 ntBASIC3.02□□□□□ -1.93
MRE11P49959 RNU6-211P-201ENST00000384047 107 ntBASIC3.02□□□□□ -1.93
MRE11P49959 Y_RNA.506-201ENST00000384494 102 ntBASIC3.02□□□□□ -1.93
MRE11P49959 RNU6-125P-201ENST00000384505 107 ntBASIC3.02□□□□□ -1.93
MRE11P49959 Z98742.3-201ENST00000418637 326 ntBASIC3.02□□□□□ -1.93
MRE11P49959 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.02□□□□□ -1.93
MRE11P49959 Y_RNA.662-201ENST00000516028 97 ntBASIC3.02□□□□□ -1.93
MRE11P49959 Y_RNA.703-201ENST00000516846 111 ntBASIC3.02□□□□□ -1.93
MRE11P49959 AP005660.1-201ENST00000522972 293 ntBASIC3.02□□□□□ -1.93
MRE11P49959 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.02□□□□□ -1.93
MRE11P49959 MIR4308-201ENST00000580634 81 ntBASIC3.02□□□□□ -1.93
MRE11P49959 MIR5006-201ENST00000583027 110 ntBASIC3.02□□□□□ -1.93
MRE11P49959 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.02□□□□□ -1.93
MRE11P49959 AC006380.1-201ENST00000603598 186 ntBASIC3.02□□□□□ -1.93
MRE11P49959 AC068205.3-201ENST00000636385 468 ntBASIC3.02□□□□□ -1.93
MRE11P49959 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
MRE11P49959 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.01□□□□□ -1.93
MRE11P49959 RNU6-1272P-201ENST00000362776 107 ntBASIC3.01□□□□□ -1.93
MRE11P49959 Y_RNA.240-201ENST00000364469 95 ntBASIC3.01□□□□□ -1.93
MRE11P49959 SNORA68.1-201ENST00000364537 132 ntBASIC3.01□□□□□ -1.93
MRE11P49959 Y_RNA.262-201ENST00000364641 102 ntBASIC3.01□□□□□ -1.93
MRE11P49959 Y_RNA.329-201ENST00000365209 107 ntBASIC3.01□□□□□ -1.93
MRE11P49959 Y_RNA.435-201ENST00000384095 112 ntBASIC3.01□□□□□ -1.93
MRE11P49959 AC024067.1-201ENST00000426199 223 ntBASIC3.01□□□□□ -1.93
MRE11P49959 RNU6-436P-201ENST00000516171 114 ntBASIC3.01□□□□□ -1.93
MRE11P49959 RNU2-44P-201ENST00000516795 194 ntBASIC3.01□□□□□ -1.93
MRE11P49959 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.01□□□□□ -1.93
MRE11P49959 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.01□□□□□ -1.93
MRE11P49959 PRELID2P1-201ENST00000552837 301 ntBASIC3.01□□□□□ -1.93
MRE11P49959 MIR6817-201ENST00000615588 66 ntBASIC3.01□□□□□ -1.93
MRE11P49959 AL365265.1-201ENST00000621045 234 ntBASIC3.01□□□□□ -1.93
MRE11P49959 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MRE11P49959 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC3.01□□□□□ -1.93
MRE11P49959 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3□□□□□ -1.93
MRE11P49959 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MRE11P49959 Y_RNA.140-201ENST00000363474 103 ntBASIC3□□□□□ -1.93
MRE11P49959 RNA5SP68-201ENST00000363885 119 ntBASIC3□□□□□ -1.93
MRE11P49959 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3□□□□□ -1.93
MRE11P49959 U3.40-201ENST00000408706 208 ntBASIC3□□□□□ -1.93
MRE11P49959 RNU6-1278P-201ENST00000516130 107 ntBASIC3□□□□□ -1.93
MRE11P49959 RNU1-117P-201ENST00000517041 158 ntBASIC3□□□□□ -1.93
MRE11P49959 AC109329.2-201ENST00000519658 482 ntBASIC3□□□□□ -1.93
MRE11P49959 MIR4635-201ENST00000583759 79 ntBASIC3□□□□□ -1.93
MRE11P49959 AL008718.3-201ENST00000610217 321 ntBASIC3□□□□□ -1.93
MRE11P49959 AC021753.1-201ENST00000635724 168 ntBASIC3□□□□□ -1.93
MRE11P49959 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
MRE11P49959 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
MRE11P49959 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
MRE11P49959 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
MRE11P49959 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
MRE11P49959 RNU6-653P-201ENST00000363074 106 ntBASIC2.99□□□□□ -1.93
MRE11P49959 SNORA67.2-201ENST00000384300 149 ntBASIC2.99□□□□□ -1.93
MRE11P49959 RNU6-1248P-201ENST00000391096 64 ntBASIC2.99□□□□□ -1.93
MRE11P49959 SNORA12-201ENST00000391162 147 ntBASIC2.99□□□□□ -1.93
MRE11P49959 BTF3P11-201ENST00000426582 477 ntBASIC2.99□□□□□ -1.93
MRE11P49959 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.99□□□□□ -1.93
MRE11P49959 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
MRE11P49959 HSPE1P18-201ENST00000517602 280 ntBASIC2.99□□□□□ -1.93
MRE11P49959 MRPS18CP4-201ENST00000535821 231 ntBASIC2.99□□□□□ -1.93
MRE11P49959 MIR5692C2-201ENST00000577959 77 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms