Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL357139.1-201ENST00000407792 426 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNU2-61P-201ENST00000411069 191 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 U8.19-201ENST00000459095 133 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 RNU6-221P-201ENST00000459541 99 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 Y_RNA.679-201ENST00000516416 91 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 MIR4446-201ENST00000578505 67 ntBASIC2.1□□□□□ -2.07
HOXD3P31249 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXD3P31249 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXD3P31249 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXD3P31249 AC068700.1-201ENST00000565862 3754 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 Y_RNA.199-201ENST00000364014 102 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 Y_RNA.200-201ENST00000364018 102 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 Y_RNA.297-201ENST00000364950 91 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 SNORA25B-201ENST00000365507 128 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 SNORA20B-201ENST00000384220 132 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 MIR9-1-201ENST00000385198 89 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 Y_RNA.626-201ENST00000411288 95 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 AC016909.1-201ENST00000415916 166 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 AL121890.1-201ENST00000435457 205 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 MTCO1P44-201ENST00000441935 243 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 PRELID3BP1-201ENST00000457142 540 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 Y_RNA.637-201ENST00000459424 114 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.09□□□□□ -2.07
HOXD3P31249 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD3P31249 RNU6-948P-201ENST00000516374 107 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 AC025647.1-201ENST00000517879 253 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 MIR4282-201ENST00000583613 67 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 AL008718.3-201ENST00000610217 321 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.09□□□□□ -2.07
HOXD3P31249 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
HOXD3P31249 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.09□□□□□ -2.08
HOXD3P31249 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HOXD3P31249 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD3P31249 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.82-201ENST00000363000 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.92-201ENST00000363043 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.235-201ENST00000364412 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.306-201ENST00000365015 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.312-201ENST00000365089 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.322-201ENST00000365151 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.332-201ENST00000365271 113 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 RNU6-211P-201ENST00000384047 107 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 RNU6-763P-201ENST00000390865 106 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 SNORA26.5-201ENST00000391215 123 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AC123900.1-201ENST00000420390 96 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AC024067.1-201ENST00000426199 223 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AL137159.1-201ENST00000452808 512 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.650-201ENST00000459002 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.638-201ENST00000459374 113 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AC114982.1-201ENST00000469402 321 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD3P31249 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.777-201ENST00000516982 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD3P31249 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.771-201ENST00000598668 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 AC022202.1-201ENST00000613515 211 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 MIR6817-201ENST00000615588 66 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 Y_RNA.789-201ENST00000622480 102 ntBASIC2.08□□□□□ -2.08
HOXD3P31249 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXD3P31249 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD3P31249 AC245060.5-201ENST00000610778 3293 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 Y_RNA.83-201ENST00000363005 113 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 SNORD114-6-201ENST00000364393 72 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 Y_RNA.361-201ENST00000365515 120 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RNU1-52P-201ENST00000384190 164 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RNU6-1235P-201ENST00000384559 107 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RNU2-64P-201ENST00000411315 191 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD3P31249 BTF3P11-201ENST00000426582 477 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD3P31249 RPS29P6-201ENST00000438196 145 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RPL39P40-201ENST00000445481 146 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 AL513328.1-201ENST00000446460 224 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 SNORD2.1-201ENST00000458762 69 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RNU6-498P-201ENST00000459468 107 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 SNORA4.4-201ENST00000515921 135 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 RNA5SP148-201ENST00000516527 94 ntBASIC2.07□□□□□ -2.08
HOXD3P31249 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD3P31249 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD3P31249 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD3P31249 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXD3P31249 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.07□□□□□ -2.08
HOXD3P31249 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.07□□□□□ -2.08
HOXD3P31249 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD3P31249 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.06□□□□□ -2.08
HOXD3P31249 RNA5SP68-201ENST00000363885 119 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 SNORA67.1-201ENST00000364749 141 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 RNU6-407P-201ENST00000365280 104 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 MIR1262-201ENST00000408276 93 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 RNU6-855P-201ENST00000410395 104 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 AC060773.1-201ENST00000421698 310 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 AC074290.1-201ENST00000448883 135 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 AC024405.2-202ENST00000532731 184 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD3P31249 MIR4635-201ENST00000583759 79 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD3P31249 MIR6733-201ENST00000635723 61 ntBASIC2.06□□□□□ -2.08
HOXD3P31249 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms