Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU4-76P-201ENST00000364509 141 ntBASIC1.52□□□□□ -2.17
BDNFP23560 Y_RNA.516-201ENST00000384541 124 ntBASIC1.52□□□□□ -2.17
BDNFP23560 SNORD116-4-201ENST00000384733 96 ntBASIC1.52□□□□□ -2.17
BDNFP23560 MIR660-201ENST00000385235 97 ntBASIC1.52□□□□□ -2.17
BDNFP23560 AC108729.3-201ENST00000513484 108 ntBASIC1.52□□□□□ -2.17
BDNFP23560 RNU7-172P-201ENST00000517125 64 ntBASIC1.52□□□□□ -2.17
BDNFP23560 AC023157.2-201ENST00000540596 141 ntBASIC1.52□□□□□ -2.17
BDNFP23560 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.52□□□□□ -2.17
BDNFP23560 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.52□□□□□ -2.17
BDNFP23560 AC005899.2-201ENST00000584353 90 ntBASIC1.52□□□□□ -2.17
BDNFP23560 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
BDNFP23560 Y_RNA.265-201ENST00000364677 108 ntBASIC1.51□□□□□ -2.17
BDNFP23560 Y_RNA.318-201ENST00000365131 97 ntBASIC1.51□□□□□ -2.17
BDNFP23560 MIR320A-201ENST00000385302 82 ntBASIC1.51□□□□□ -2.17
BDNFP23560 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.51□□□□□ -2.17
BDNFP23560 SNRPGP13-201ENST00000442212 177 ntBASIC1.51□□□□□ -2.17
BDNFP23560 MTND5P5-201ENST00000503764 376 ntBASIC1.51□□□□□ -2.17
BDNFP23560 AC097462.1-201ENST00000514125 324 ntBASIC1.51□□□□□ -2.17
BDNFP23560 RNU6-322P-201ENST00000516010 103 ntBASIC1.51□□□□□ -2.17
BDNFP23560 Y_RNA.682-201ENST00000516457 100 ntBASIC1.51□□□□□ -2.17
BDNFP23560 RNU2-56P-201ENST00000516826 190 ntBASIC1.51□□□□□ -2.17
BDNFP23560 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.51□□□□□ -2.17
BDNFP23560 CBX3P8-201ENST00000532412 525 ntBASIC1.51□□□□□ -2.17
BDNFP23560 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.51□□□□□ -2.17
BDNFP23560 AC073413.2-201ENST00000604332 360 ntBASIC1.51□□□□□ -2.17
BDNFP23560 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.51□□□□□ -2.17
BDNFP23560 AC104260.1-201ENST00000616660 539 ntBASIC1.51□□□□□ -2.17
BDNFP23560 MIR6079-201ENST00000635807 62 ntBASIC1.51□□□□□ -2.17
BDNFP23560 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.51□□□□□ -2.17
BDNFP23560 Y_RNA.2-201ENST00000362330 96 ntBASIC1.5□□□□□ -2.17
BDNFP23560 RNU6-842P-201ENST00000384269 107 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AC107399.1-201ENST00000451226 265 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AC009474.2-201ENST00000451383 136 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.5□□□□□ -2.17
BDNFP23560 RNU6-329P-201ENST00000459618 107 ntBASIC1.5□□□□□ -2.17
BDNFP23560 RNU6-1278P-201ENST00000516130 107 ntBASIC1.5□□□□□ -2.17
BDNFP23560 Y_RNA.708-201ENST00000516950 96 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AC027419.1-201ENST00000522976 328 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.5□□□□□ -2.17
BDNFP23560 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.5□□□□□ -2.17
BDNFP23560 AP000648.3-201ENST00000623539 4507 ntBASIC1.5□□□□□ -2.17
BDNFP23560 AC073544.1-201ENST00000600110 1595 ntBASIC1.5□□□□□ -2.17
BDNFP23560 RNA5SP327-201ENST00000362494 101 ntBASIC1.49□□□□□ -2.17
BDNFP23560 U8.1-201ENST00000362843 134 ntBASIC1.49□□□□□ -2.17
BDNFP23560 SNORA7.1-201ENST00000363750 139 ntBASIC1.49□□□□□ -2.17
BDNFP23560 RNU6-1059P-201ENST00000363752 98 ntBASIC1.49□□□□□ -2.17
BDNFP23560 EIF1P2-201ENST00000428233 350 ntBASIC1.49□□□□□ -2.17
BDNFP23560 STAG3L5P-204ENST00000443759 179 ntBASIC1.49□□□□□ -2.17
BDNFP23560 RNU7-87P-201ENST00000459343 62 ntBASIC1.49□□□□□ -2.17
BDNFP23560 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.49□□□□□ -2.17
BDNFP23560 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.49□□□□□ -2.17
BDNFP23560 AC008269.2-201ENST00000561915 1105 ntBASIC1.49□□□□□ -2.17
BDNFP23560 MIR4421-201ENST00000578133 69 ntBASIC1.49□□□□□ -2.17
BDNFP23560 MIR5701-3-201ENST00000578890 82 ntBASIC1.49□□□□□ -2.17
BDNFP23560 MIR5701-1-201ENST00000585138 82 ntBASIC1.49□□□□□ -2.17
BDNFP23560 MIR5701-2-201ENST00000615634 82 ntBASIC1.49□□□□□ -2.17
BDNFP23560 RNU6-222P-201ENST00000362438 107 ntBASIC1.48□□□□□ -2.17
BDNFP23560 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.48□□□□□ -2.17
BDNFP23560 AC092989.1-201ENST00000481235 277 ntBASIC1.48□□□□□ -2.17
BDNFP23560 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.48□□□□□ -2.17
BDNFP23560 GHRLOS.1-201ENST00000610995 70 ntBASIC1.48□□□□□ -2.17
BDNFP23560 AC002553.4-201ENST00000616896 331 ntBASIC1.48□□□□□ -2.17
BDNFP23560 PISRT1.1-201ENST00000616930 107 ntBASIC1.48□□□□□ -2.17
BDNFP23560 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
BDNFP23560 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
BDNFP23560 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
BDNFP23560 RNU6-199P-201ENST00000362954 107 ntBASIC1.47□□□□□ -2.17
BDNFP23560 RNY1P16-201ENST00000363063 111 ntBASIC1.47□□□□□ -2.17
BDNFP23560 RNU1-22P-201ENST00000363334 158 ntBASIC1.47□□□□□ -2.17
BDNFP23560 Y_RNA.498-201ENST00000384460 102 ntBASIC1.47□□□□□ -2.17
BDNFP23560 RNU6-1148P-201ENST00000410992 104 ntBASIC1.47□□□□□ -2.17
BDNFP23560 RNU6-1001P-201ENST00000411265 100 ntBASIC1.47□□□□□ -2.17
BDNFP23560 PCNPP5-201ENST00000452246 481 ntBASIC1.47□□□□□ -2.17
BDNFP23560 AL163540.1-201ENST00000485382 386 ntBASIC1.47□□□□□ -2.17
BDNFP23560 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.47□□□□□ -2.17
BDNFP23560 RNU6-1053P-201ENST00000515930 101 ntBASIC1.47□□□□□ -2.17
BDNFP23560 SNORA31.4-201ENST00000516049 129 ntBASIC1.47□□□□□ -2.17
BDNFP23560 AC105029.1-201ENST00000520250 669 ntBASIC1.47□□□□□ -2.17
BDNFP23560 AP002004.2-201ENST00000531656 154 ntBASIC1.47□□□□□ -2.17
BDNFP23560 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.47□□□□□ -2.17
BDNFP23560 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.47□□□□□ -2.17
BDNFP23560 AL357312.1-201ENST00000603879 298 ntBASIC1.47□□□□□ -2.17
BDNFP23560 Y_RNA.48-201ENST00000362710 103 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNU6-879P-201ENST00000364328 108 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNU4-40P-201ENST00000364351 143 ntBASIC1.46□□□□□ -2.18
BDNFP23560 SNORA20B-201ENST00000384220 132 ntBASIC1.46□□□□□ -2.18
BDNFP23560 SNORA25-201ENST00000384384 134 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNU6-376P-201ENST00000384731 106 ntBASIC1.46□□□□□ -2.18
BDNFP23560 MIR222-201ENST00000384992 110 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNU6-1050P-201ENST00000410388 107 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNA5SP475-201ENST00000410568 110 ntBASIC1.46□□□□□ -2.18
BDNFP23560 MTND3P8-201ENST00000412909 339 ntBASIC1.46□□□□□ -2.18
BDNFP23560 AC026782.1-201ENST00000512952 449 ntBASIC1.46□□□□□ -2.18
BDNFP23560 RNU6-341P-201ENST00000516973 96 ntBASIC1.46□□□□□ -2.18
BDNFP23560 MIR2355-201ENST00000517199 87 ntBASIC1.46□□□□□ -2.18
BDNFP23560 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.46□□□□□ -2.18
BDNFP23560 AF235103.2-201ENST00000525753 346 ntBASIC1.46□□□□□ -2.18
BDNFP23560 BX284668.6-201ENST00000606899 438 ntBASIC1.46□□□□□ -2.18
BDNFP23560 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.46□□□□□ -2.18
BDNFP23560 Y_RNA.72-201ENST00000362894 103 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms