Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU4-50P-201ENST00000364361 141 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 RNU6-1026P-201ENST00000384465 108 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 Y_RNA.526-201ENST00000384572 110 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 MIR518A2-201ENST00000384966 87 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 MIR676-201ENST00000390702 67 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 SDAD1P3-201ENST00000427380 333 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 RPEP5-201ENST00000441137 268 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 HMGN2P18-201ENST00000450680 270 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 U8.20-201ENST00000459445 131 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.71□□□□□ -2.14
HOXD4P09016 SNORA40.9-201ENST00000515895 93 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 RNU6-327P-201ENST00000516270 127 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 Y_RNA.715-201ENST00000517082 110 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXD4P09016 AK6P2-201ENST00000549020 471 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 MIR4659A-201ENST00000580269 81 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 AL109918.3-201ENST00000603072 338 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 PART1_1.1-201ENST00000611761 217 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXD4P09016 AC022202.1-201ENST00000613515 211 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.71□□□□□ -2.14
HOXD4P09016 AC008873.1-201ENST00000625051 138 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 AC068205.3-201ENST00000636385 468 ntBASIC1.71□□□□□ -2.14
HOXD4P09016 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXD4P09016 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
HOXD4P09016 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXD4P09016 SNORD31B-201ENST00000364977 69 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 Y_RNA.458-201ENST00000384240 102 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 Y_RNA.471-201ENST00000384312 102 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AL357139.1-201ENST00000407792 426 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 MIR1283-1-201ENST00000408494 87 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 MIR1252-201ENST00000408861 65 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RNU6-130P-201ENST00000411112 103 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RNA5SP450-201ENST00000411206 102 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 UQCRBP2-201ENST00000447827 297 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 FCF1P4-201ENST00000448326 183 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AC245102.2-201ENST00000448956 180 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 PRELID3BP1-201ENST00000457142 540 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 HMGN2P9-201ENST00000476875 229 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RPL26P26-201ENST00000480251 434 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RPL23AP63-201ENST00000498752 471 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 MRPS17P9-201ENST00000511924 393 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RNU6-1046P-201ENST00000516538 107 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 Y_RNA.720-201ENST00000517166 92 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 MIR4287-201ENST00000579398 78 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 RAC1P9-201ENST00000604990 392 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AL121655.1-201ENST00000605811 308 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AL021879.1-201ENST00000611756 288 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AC240442.1-201ENST00000616055 283 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AL078596.1-201ENST00000624856 447 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.7□□□□□ -2.14
HOXD4P09016 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXD4P09016 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXD4P09016 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.69□□□□□ -2.14
HOXD4P09016 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.69□□□□□ -2.14
HOXD4P09016 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
HOXD4P09016 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
HOXD4P09016 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
HOXD4P09016 Y_RNA.145-201ENST00000363527 102 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 RNU6-961P-201ENST00000363893 105 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 RNU6-1305P-201ENST00000364353 104 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 Y_RNA.551-201ENST00000384661 102 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 MRPL35P1-201ENST00000404272 572 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 ELOCP21-201ENST00000412558 336 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 PCNPP5-201ENST00000452246 481 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC016925.1-201ENST00000458303 298 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC010655.3-201ENST00000478818 450 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC093259.1-201ENST00000509755 300 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC067942.3-201ENST00000512025 362 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 RNU6-397P-201ENST00000516226 104 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.69□□□□□ -2.14
HOXD4P09016 MIR3683-201ENST00000580847 82 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 AC008737.2-201ENST00000599446 118 ntBASIC1.69□□□□□ -2.14
HOXD4P09016 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HOXD4P09016 RNU6-438P-201ENST00000365561 103 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 SNORA63.7-201ENST00000365579 123 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 Y_RNA.380-201ENST00000365663 111 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 MIR586-201ENST00000385035 97 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 MIR300-201ENST00000401138 83 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 SRIP3-201ENST00000413200 219 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 MTND2P29-201ENST00000438595 412 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AL353689.1-201ENST00000438895 199 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.68□□□□□ -2.14
HOXD4P09016 MTATP8P1-201ENST00000467115 207 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 RNU6-408P-201ENST00000515910 100 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AC131281.1-201ENST00000522984 164 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AC018448.1-201ENST00000552843 316 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AC136443.5-201ENST00000603741 370 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AL355297.3-201ENST00000604082 446 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AC005034.5-201ENST00000604219 466 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 snoU13.31-201ENST00000607291 104 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 AC010205.1-201ENST00000616668 449 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.68□□□□□ -2.14
HOXD4P09016 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
HOXD4P09016 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HOXD4P09016 MIR340-201ENST00000362125 95 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 MIR378A-201ENST00000362177 66 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 Y_RNA.226-201ENST00000364337 114 ntBASIC1.67□□□□□ -2.14
HOXD4P09016 Y_RNA.332-201ENST00000365271 113 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms