Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.7□□□□□ -2.3
CPSF4O95639 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.7□□□□□ -2.3
CPSF4O95639 RNU6-107P-201ENST00000516643 102 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 RNA5SP404-201ENST00000517118 132 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 APOOP3-201ENST00000536787 586 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 AC023157.2-201ENST00000540596 141 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.7□□□□□ -2.3
CPSF4O95639 AC080013.6-201ENST00000606185 215 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 AC012676.2-201ENST00000619258 186 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 AC106754.2-201ENST00000623006 233 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 SNORD3E-202ENST00000627253 216 ntBASIC0.7□□□□□ -2.3
CPSF4O95639 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.7□□□□□ -2.3
CPSF4O95639 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.7□□□□□ -2.3
CPSF4O95639 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CPSF4O95639 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
CPSF4O95639 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
CPSF4O95639 Y_RNA.450-201ENST00000384198 113 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 RNU6-842P-201ENST00000384269 107 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 RNU6-505P-201ENST00000384427 107 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 MIR222-201ENST00000384992 110 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 MTND4LP16-201ENST00000440828 295 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 MRPS10P1-201ENST00000448483 130 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 MTND1P17-201ENST00000448961 204 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.69□□□□□ -2.3
CPSF4O95639 RPS27P22-201ENST00000478056 241 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 AC010469.2-201ENST00000496412 480 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 Y_RNA.683-201ENST00000516508 93 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 RNU6-566P-201ENST00000516790 107 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.69□□□□□ -2.3
CPSF4O95639 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.69□□□□□ -2.3
CPSF4O95639 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.69□□□□□ -2.3
CPSF4O95639 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.69□□□□□ -2.3
CPSF4O95639 AC012557.2-201ENST00000605919 418 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 AC073349.3-201ENST00000617616 186 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.69□□□□□ -2.3
CPSF4O95639 AL513423.1-201ENST00000621695 132 ntBASIC0.69□□□□□ -2.3
CPSF4O95639 AC018630.2-201ENST00000534866 2403 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 Y_RNA.106-201ENST00000363189 100 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 RNU4-12P-201ENST00000365233 139 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 SNORA25-201ENST00000384384 134 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 MIR660-201ENST00000385235 97 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC009161.1-201ENST00000417306 376 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 USMG5P1-201ENST00000425964 177 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 USP9YP16-201ENST00000430287 407 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 STAG3L5P-204ENST00000443759 179 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 MTATP6P26-201ENST00000445926 662 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.68□□□□□ -2.3
CPSF4O95639 USP9YP23-201ENST00000455085 407 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 RNU7-94P-201ENST00000459576 63 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.68□□□□□ -2.3
CPSF4O95639 AC117454.1-201ENST00000491120 168 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC010598.1-201ENST00000510378 103 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC108729.3-201ENST00000513484 108 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 RNU6-1114P-201ENST00000516022 107 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 SNORD116-28-201ENST00000516123 91 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 RNU6-922P-201ENST00000516753 99 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 Y_RNA.706-201ENST00000516933 99 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 RNU1-54P-201ENST00000517181 120 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 MIR4778-201ENST00000577635 80 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AL022345.2-201ENST00000606307 135 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 BX284668.6-201ENST00000606899 438 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 MIR6128-201ENST00000615528 109 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AC068137.4-201ENST00000638485 296 ntBASIC0.68□□□□□ -2.3
CPSF4O95639 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
CPSF4O95639 MIR373-201ENST00000362273 69 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 RNU1-124P-201ENST00000363861 145 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 Y_RNA.295-201ENST00000364918 102 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 Y_RNA.301-201ENST00000364990 103 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 RNU6-1013P-201ENST00000384180 107 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 Y_RNA.490-201ENST00000384413 102 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 RNU1-139P-201ENST00000391307 165 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.67□□□□□ -2.3
CPSF4O95639 HSPE1P13-201ENST00000451143 297 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC093023.1-201ENST00000547375 507 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 MIR4498-201ENST00000577599 66 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.67□□□□□ -2.3
CPSF4O95639 AL162424.1-201ENST00000602325 221 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AL513534.2-201ENST00000603836 250 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC100812.1-201ENST00000607622 580 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC027335.2-201ENST00000624030 375 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AL359757.2-201ENST00000624309 274 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 AC006435.5-201ENST00000624486 112 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 MIR6079-201ENST00000635807 62 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 MIR3662-201ENST00000637030 95 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 MIR6767-201ENST00000637302 66 ntBASIC0.67□□□□□ -2.3
CPSF4O95639 Y_RNA.3-201ENST00000362331 103 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 Y_RNA.157-201ENST00000363638 102 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 RNU4-76P-201ENST00000364509 141 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 SNORA20B-201ENST00000384220 132 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
CPSF4O95639 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
CPSF4O95639 AL355796.1-201ENST00000406706 323 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 RNA5SP118-201ENST00000410385 109 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 RNU6-321P-201ENST00000410912 106 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 RNU6-1001P-201ENST00000411265 100 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.66□□□□□ -2.3
CPSF4O95639 RAB28P5-201ENST00000427490 651 ntBASIC0.66□□□□□ -2.3
CPSF4O95639 AL589823.1-201ENST00000429577 183 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms