Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC099654.5-201ENST00000636479 350 ntBASIC1.58□□□□□ -2.16
SIX3O95343 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.58□□□□□ -2.16
SIX3O95343 AC068700.1-201ENST00000565862 3754 ntBASIC1.57□□□□□ -2.16
SIX3O95343 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
SIX3O95343 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.57□□□□□ -2.16
SIX3O95343 SNORD114-22-201ENST00000365423 72 ntBASIC1.57□□□□□ -2.16
SIX3O95343 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SIX3O95343 AL627390.1-201ENST00000396055 340 ntBASIC1.57□□□□□ -2.16
SIX3O95343 AC016909.1-201ENST00000415916 166 ntBASIC1.57□□□□□ -2.16
SIX3O95343 MTND4P18-201ENST00000447010 465 ntBASIC1.57□□□□□ -2.16
SIX3O95343 UQCRBP2-201ENST00000447827 297 ntBASIC1.57□□□□□ -2.16
SIX3O95343 MTND3P10-201ENST00000450967 341 ntBASIC1.57□□□□□ -2.16
SIX3O95343 AC079140.2-201ENST00000506193 142 ntBASIC1.57□□□□□ -2.16
SIX3O95343 SNORA25.15-201ENST00000516487 89 ntBASIC1.57□□□□□ -2.16
SIX3O95343 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.57□□□□□ -2.16
SIX3O95343 MIR3937-201ENST00000580135 106 ntBASIC1.57□□□□□ -2.16
SIX3O95343 AC022432.1-201ENST00000595739 310 ntBASIC1.57□□□□□ -2.16
SIX3O95343 AL512598.1-201ENST00000610158 273 ntBASIC1.57□□□□□ -2.16
SIX3O95343 uc_338.5-201ENST00000611839 155 ntBASIC1.57□□□□□ -2.16
SIX3O95343 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.57□□□□□ -2.16
SIX3O95343 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.56□□□□□ -2.16
SIX3O95343 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.56□□□□□ -2.16
SIX3O95343 Y_RNA.251-201ENST00000364551 99 ntBASIC1.56□□□□□ -2.16
SIX3O95343 SNORA4.2-201ENST00000365313 147 ntBASIC1.56□□□□□ -2.16
SIX3O95343 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.56□□□□□ -2.16
SIX3O95343 RNA5SP109-201ENST00000391010 116 ntBASIC1.56□□□□□ -2.16
SIX3O95343 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.56□□□□□ -2.16
SIX3O95343 AC082651.2-201ENST00000496833 166 ntBASIC1.56□□□□□ -2.16
SIX3O95343 AC022868.1-201ENST00000517767 391 ntBASIC1.56□□□□□ -2.16
SIX3O95343 AC019176.1-201ENST00000518519 225 ntBASIC1.56□□□□□ -2.16
SIX3O95343 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.56□□□□□ -2.16
SIX3O95343 MIR4303-201ENST00000581299 66 ntBASIC1.56□□□□□ -2.16
SIX3O95343 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SIX3O95343 SNORD33-201ENST00000362761 85 ntBASIC1.55□□□□□ -2.16
SIX3O95343 RNU6-271P-201ENST00000363858 105 ntBASIC1.55□□□□□ -2.16
SIX3O95343 Y_RNA.364-201ENST00000365532 101 ntBASIC1.55□□□□□ -2.16
SIX3O95343 RNU1-139P-201ENST00000391307 165 ntBASIC1.55□□□□□ -2.16
SIX3O95343 RPS20P15-201ENST00000412792 311 ntBASIC1.55□□□□□ -2.16
SIX3O95343 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.55□□□□□ -2.16
SIX3O95343 RNU1-98P-201ENST00000458992 160 ntBASIC1.55□□□□□ -2.16
SIX3O95343 RPS27P22-201ENST00000478056 241 ntBASIC1.55□□□□□ -2.16
SIX3O95343 CYCSP23-201ENST00000519781 313 ntBASIC1.55□□□□□ -2.16
SIX3O95343 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.55□□□□□ -2.16
SIX3O95343 AC006026.1-201ENST00000444025 1803 ntBASIC1.54□□□□□ -2.16
SIX3O95343 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SIX3O95343 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
SIX3O95343 Y_RNA.88-201ENST00000363029 99 ntBASIC1.54□□□□□ -2.16
SIX3O95343 Y_RNA.248-201ENST00000364501 109 ntBASIC1.54□□□□□ -2.16
SIX3O95343 RNU6-281P-201ENST00000384212 103 ntBASIC1.54□□□□□ -2.16
SIX3O95343 RNU6-1001P-201ENST00000411265 100 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AL161935.2-201ENST00000414627 60 ntBASIC1.54□□□□□ -2.16
SIX3O95343 TOMM22P2-201ENST00000430735 237 ntBASIC1.54□□□□□ -2.16
SIX3O95343 Y_RNA.635-201ENST00000459041 101 ntBASIC1.54□□□□□ -2.16
SIX3O95343 HAR1A.1-201ENST00000459583 118 ntBASIC1.54□□□□□ -2.16
SIX3O95343 RPL31P58-201ENST00000469001 379 ntBASIC1.54□□□□□ -2.16
SIX3O95343 Y_RNA.681-201ENST00000516445 113 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AC091144.1-201ENST00000519573 138 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AC004584.2-201ENST00000570407 410 ntBASIC1.54□□□□□ -2.16
SIX3O95343 MIR4255-201ENST00000579351 72 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AC136443.5-201ENST00000603741 370 ntBASIC1.54□□□□□ -2.16
SIX3O95343 MIR502-201ENST00000606349 86 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AC005014.2-201ENST00000607795 599 ntBASIC1.54□□□□□ -2.16
SIX3O95343 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.54□□□□□ -2.16
SIX3O95343 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.54□□□□□ -2.16
SIX3O95343 AC092794.2-201ENST00000620933 563 ntBASIC1.54□□□□□ -2.16
SIX3O95343 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.54□□□□□ -2.16
SIX3O95343 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SIX3O95343 RNA5SP259-201ENST00000365541 109 ntBASIC1.53□□□□□ -2.16
SIX3O95343 RNU1-78P-201ENST00000391248 165 ntBASIC1.53□□□□□ -2.16
SIX3O95343 SNORA75.4-201ENST00000391278 119 ntBASIC1.53□□□□□ -2.16
SIX3O95343 MRPL35P1-201ENST00000404272 572 ntBASIC1.53□□□□□ -2.16
SIX3O95343 AC005534.2-201ENST00000431047 433 ntBASIC1.53□□□□□ -2.16
SIX3O95343 AC005002.2-201ENST00000438228 269 ntBASIC1.53□□□□□ -2.16
SIX3O95343 FGF7P6-202ENST00000451282 293 ntBASIC1.53□□□□□ -2.16
SIX3O95343 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.53□□□□□ -2.16
SIX3O95343 RNA5SP395-201ENST00000516567 118 ntBASIC1.53□□□□□ -2.16
SIX3O95343 RNU6-264P-201ENST00000517134 104 ntBASIC1.53□□□□□ -2.16
SIX3O95343 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.53□□□□□ -2.16
SIX3O95343 SNORA77B-201ENST00000578179 125 ntBASIC1.53□□□□□ -2.16
SIX3O95343 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.53□□□□□ -2.16
SIX3O95343 AC096720.1-201ENST00000604441 183 ntBASIC1.53□□□□□ -2.16
SIX3O95343 AL121890.5-201ENST00000620848 304 ntBASIC1.53□□□□□ -2.16
SIX3O95343 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SIX3O95343 RNU6-845P-201ENST00000362578 103 ntBASIC1.52□□□□□ -2.17
SIX3O95343 Y_RNA.358-201ENST00000365491 99 ntBASIC1.52□□□□□ -2.17
SIX3O95343 Y_RNA.498-201ENST00000384460 102 ntBASIC1.52□□□□□ -2.17
SIX3O95343 RNU6-1065P-201ENST00000384513 106 ntBASIC1.52□□□□□ -2.17
SIX3O95343 RN7SKP200-201ENST00000410564 320 ntBASIC1.52□□□□□ -2.17
SIX3O95343 AC010154.1-201ENST00000425857 269 ntBASIC1.52□□□□□ -2.17
SIX3O95343 AC245047.3-201ENST00000429428 127 ntBASIC1.52□□□□□ -2.17
SIX3O95343 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
SIX3O95343 HMGN1P7-201ENST00000491722 313 ntBASIC1.52□□□□□ -2.17
SIX3O95343 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.52□□□□□ -2.17
SIX3O95343 SCARNA16.2-201ENST00000516520 172 ntBASIC1.52□□□□□ -2.17
SIX3O95343 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.52□□□□□ -2.17
SIX3O95343 AC023157.2-201ENST00000540596 141 ntBASIC1.52□□□□□ -2.17
SIX3O95343 MIR4438-201ENST00000585271 93 ntBASIC1.52□□□□□ -2.17
SIX3O95343 AL929325.1-201ENST00000603096 117 ntBASIC1.52□□□□□ -2.17
SIX3O95343 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.52□□□□□ -2.17
SIX3O95343 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 161.9 ms