Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.07□□□□□ -2.24
CLDN3O15551 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.07□□□□□ -2.24
CLDN3O15551 SNORA31.2-201ENST00000516019 134 ntBASIC1.07□□□□□ -2.24
CLDN3O15551 Y_RNA.683-201ENST00000516508 93 ntBASIC1.07□□□□□ -2.24
CLDN3O15551 AC090617.10-201ENST00000624308 134 ntBASIC1.07□□□□□ -2.24
CLDN3O15551 ZNF299P-201ENST00000406845 1804 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 Y_RNA.265-201ENST00000364677 108 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 Y_RNA.402-201ENST00000383972 102 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 RAB28P5-201ENST00000427490 651 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 MTND2P22-201ENST00000444325 1033 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 Y_RNA.706-201ENST00000516933 99 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 RNU1-54P-201ENST00000517181 120 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 GHRLOS.1-201ENST00000610995 70 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 MIR6504-201ENST00000613520 61 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 AC012676.2-201ENST00000619258 186 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 AC048344.4-201ENST00000619744 527 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.06□□□□□ -2.24
CLDN3O15551 AC006435.5-201ENST00000624486 112 ntBASIC1.06□□□□□ -2.24
CLDN3O15551 Y_RNA.238-201ENST00000364441 102 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 RNU11-5P-201ENST00000391216 129 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 AC009161.1-201ENST00000417306 376 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 USP9YP16-201ENST00000430287 407 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 MTND3P23-201ENST00000431980 347 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 MTND3P21-201ENST00000433774 331 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 MTCO2P7-201ENST00000446518 666 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 Z83846.1-201ENST00000446798 265 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 USP9YP23-201ENST00000455085 407 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.05□□□□□ -2.24
CLDN3O15551 AC105758.1-201ENST00000506038 399 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 AC010598.1-201ENST00000510378 103 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 SNORA31.4-201ENST00000516049 129 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 RNU6-947P-201ENST00000516264 106 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 RNU7-172P-201ENST00000517125 64 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 MIR6079-201ENST00000635807 62 ntBASIC1.05□□□□□ -2.24
CLDN3O15551 RNU6-222P-201ENST00000362438 107 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU6-199P-201ENST00000362954 107 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU1-124P-201ENST00000363861 145 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU4-75P-201ENST00000364621 146 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 MIR499A-201ENST00000384903 122 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU6-910P-201ENST00000390844 107 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.04□□□□□ -2.24
CLDN3O15551 MTND4LP16-201ENST00000440828 295 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
CLDN3O15551 RNU6-1114P-201ENST00000516022 107 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 SNORD116-28-201ENST00000516123 91 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU6-113P-201ENST00000516653 101 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RNU2-56P-201ENST00000516826 190 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.04□□□□□ -2.24
CLDN3O15551 AC093023.1-201ENST00000547375 507 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 RPL21P9-201ENST00000556149 474 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC136443.5-201ENST00000603741 370 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC103810.9-201ENST00000606688 112 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC100812.1-201ENST00000607622 580 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 AC100810.6-201ENST00000638068 285 ntBASIC1.04□□□□□ -2.24
CLDN3O15551 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
CLDN3O15551 RNU6-1059P-201ENST00000363752 98 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 RNU6-595P-201ENST00000363944 107 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 Y_RNA.267-201ENST00000364679 109 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 RNU6-1013P-201ENST00000384180 107 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 AC048334.1-201ENST00000477975 159 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 AC097462.1-201ENST00000514125 324 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 RNU6-864P-201ENST00000516256 108 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 RNA5SP168-201ENST00000516642 112 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 RNU6-1314P-201ENST00000517139 104 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.03□□□□□ -2.24
CLDN3O15551 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.03□□□□□ -2.24
CLDN3O15551 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.03□□□□□ -2.24
CLDN3O15551 MIR6128-201ENST00000615528 109 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 MIR6767-201ENST00000637302 66 ntBASIC1.03□□□□□ -2.24
CLDN3O15551 Y_RNA.48-201ENST00000362710 103 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 RNU1-93P-201ENST00000364704 169 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 RNU6-596P-201ENST00000365395 98 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 Y_RNA.490-201ENST00000384413 102 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 MIR532-201ENST00000385025 91 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 MIR181A1-201ENST00000385026 110 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 AL451046.2-201ENST00000403074 277 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 MTCO3P19-201ENST00000415864 321 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 DLGAP5P1-201ENST00000430307 464 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 USP9YP30-201ENST00000430729 455 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.02□□□□□ -2.25
CLDN3O15551 RNU6-322P-201ENST00000516010 103 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CLDN3O15551 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.02□□□□□ -2.25
CLDN3O15551 AC012557.2-201ENST00000605919 418 ntBASIC1.02□□□□□ -2.25
CLDN3O15551 Y_RNA.9-201ENST00000362354 101 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 RNU4-79P-201ENST00000362764 141 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 RNU4-24P-201ENST00000364565 139 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 RNU6-407P-201ENST00000365280 104 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 SNORD114-22-201ENST00000365423 72 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 SNORA22-201ENST00000383907 134 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 RNU6-281P-201ENST00000384212 103 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 SNORA20B-201ENST00000384220 132 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 SNORA22C-201ENST00000384614 134 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 AL355796.1-201ENST00000406706 323 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 CALM2P4-201ENST00000430810 426 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.01□□□□□ -2.25
CLDN3O15551 AC018710.1-201ENST00000506509 158 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 UBL5P1-201ENST00000507979 193 ntBASIC1.01□□□□□ -2.25
CLDN3O15551 RNU6-1088P-201ENST00000516850 104 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms