Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.18□□□□□ -2.38
SDCBPO00560 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.18□□□□□ -2.38
SDCBPO00560 RNU6-1291P-201ENST00000516591 104 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 RNU2-56P-201ENST00000516826 190 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 RNA5SP54-201ENST00000516951 92 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 RNU7-172P-201ENST00000517125 64 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AC091144.1-201ENST00000519573 138 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
SDCBPO00560 AC104383.1-201ENST00000530297 370 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 MIR3915-201ENST00000578518 97 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 SNORA4-201ENST00000584302 138 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AC092747.3-201ENST00000603769 301 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AC005014.3-201ENST00000605985 190 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AL357078.3-201ENST00000607528 618 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
SDCBPO00560 AC022709.1-201ENST00000615967 87 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 RMST_2.1-201ENST00000617263 136 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AC007494.3-201ENST00000624660 743 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 AL589743.1-201ENST00000551932 2712 ntBASIC0.18□□□□□ -2.38
SDCBPO00560 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
SDCBPO00560 Y_RNA.116-201ENST00000363292 103 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 Y_RNA.201-201ENST00000364052 96 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RNU4-41P-201ENST00000364426 143 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RNU6-1158P-201ENST00000391167 107 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 AL606923.1-201ENST00000406616 190 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 MTCO2P16-201ENST00000436962 677 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RPS20P10-201ENST00000451209 253 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 HSFY5P-201ENST00000453726 309 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RNA5SP436-201ENST00000516020 115 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RNU7-28P-201ENST00000516759 62 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 RNU6-341P-201ENST00000516973 96 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 AC023442.1-201ENST00000531247 422 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 UBL5P4-201ENST00000562584 236 ntBASIC0.17□□□□□ -2.38
SDCBPO00560 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.17□□□□□ -2.38
SDCBPO00560 Y_RNA.167-201ENST00000363735 109 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 RNU6-163P-201ENST00000384396 106 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 RNU6-1067P-201ENST00000384752 107 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AL590002.1-201ENST00000406554 418 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 ZNF885P-201ENST00000420174 1098 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AL359672.1-201ENST00000442302 409 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AC108740.1-201ENST00000498629 225 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.16□□□□□ -2.38
SDCBPO00560 AF235103.2-201ENST00000525753 346 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.16□□□□□ -2.38
SDCBPO00560 AL354950.2-201ENST00000617939 290 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 AC006435.5-201ENST00000624486 112 ntBASIC0.16□□□□□ -2.38
SDCBPO00560 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
SDCBPO00560 RNU6-833P-201ENST00000363486 107 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 Y_RNA.319-201ENST00000365138 92 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 Y_RNA.354-201ENST00000365448 111 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.15□□□□□ -2.39
SDCBPO00560 SNORA20B-201ENST00000384220 132 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 SNORD105-201ENST00000386910 85 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 MT-TH-201ENST00000387441 69 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 RNA5SP482-201ENST00000391269 118 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 RNU6-177P-201ENST00000411257 104 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.15□□□□□ -2.39
SDCBPO00560 MTCO3P19-201ENST00000415864 321 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 AL353193.1-201ENST00000421444 268 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.15□□□□□ -2.39
SDCBPO00560 PIGPP3-201ENST00000425307 415 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 MRPS10P2-201ENST00000431226 381 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 AC093019.1-201ENST00000443135 252 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.15□□□□□ -2.39
SDCBPO00560 AC010598.1-201ENST00000510378 103 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 AP002004.2-201ENST00000531656 154 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 AC087683.1-201ENST00000591187 441 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 AL133215.3-201ENST00000609801 448 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 FAM157A-202ENST00000615155 405 ntBASIC0.15□□□□□ -2.39
SDCBPO00560 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.15□□□□□ -2.39
SDCBPO00560 RNU6-654P-201ENST00000364373 107 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 RNU4-20P-201ENST00000365601 151 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 RNU6-38P-201ENST00000384085 107 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 RNY3P10-201ENST00000384764 102 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 MIR518E-201ENST00000385252 88 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 MIR140-201ENST00000385282 100 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 MIR891A-201ENST00000401237 79 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 MIR1827-201ENST00000408549 66 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 MIR1302-7-201ENST00000408841 72 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 RNU5A-5P-201ENST00000411054 116 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.14□□□□□ -2.39
SDCBPO00560 MTCO1P29-201ENST00000496868 288 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 AC018710.1-201ENST00000506509 158 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 AC091885.1-201ENST00000506658 268 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 SCARNA1-201ENST00000517138 166 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.14□□□□□ -2.39
SDCBPO00560 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC0.14□□□□□ -2.39
SDCBPO00560 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 AC009248.2-201ENST00000619826 254 ntBASIC0.14□□□□□ -2.39
SDCBPO00560 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.14□□□□□ -2.39
SDCBPO00560 MIR103A1-201ENST00000362165 78 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 RNU6-82P-201ENST00000363970 107 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 SNORD115-32-201ENST00000364079 82 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 RNU6-793P-201ENST00000384233 104 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 SNORA26.8-201ENST00000391306 124 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 RPL30P16-201ENST00000419341 429 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 AC018865.2-201ENST00000423631 129 ntBASIC0.13□□□□□ -2.39
SDCBPO00560 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.13□□□□□ -2.39
SDCBPO00560 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms