Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 ATP5EP1-201ENST00000510257 156 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 SNORD59.2-201ENST00000516873 68 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AP001328.1-201ENST00000528550 176 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 MIR3646-201ENST00000578301 84 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AP003357.1-201ENST00000604497 148 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 MIR7153-201ENST00000637758 57 ntBASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.91□□□□□ -1.78
CHMP3Q9Y3E7 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
CHMP3Q9Y3E7 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHMP3Q9Y3E7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
CHMP3Q9Y3E7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.9□□□□□ -1.78
CHMP3Q9Y3E7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CHMP3Q9Y3E7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-944P-201ENST00000364023 107 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 Y_RNA.294-201ENST00000364916 102 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 SNORA7.4-201ENST00000384249 137 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 RNU1-101P-201ENST00000391171 127 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 SNORD65B-201ENST00000459126 73 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 AC127455.1-201ENST00000565496 145 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 POLR3GP1-201ENST00000594073 261 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.9□□□□□ -1.79
CHMP3Q9Y3E7 AC009487.2-201ENST00000420969 6821 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 SNORD15B-201ENST00000384714 146 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 MIR767-201ENST00000390228 109 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 RNU4-43P-201ENST00000410628 137 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 HSPE1P13-201ENST00000451143 297 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 SNRPGP8-201ENST00000454064 226 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC006539.3-201ENST00000454258 129 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 RPS26P55-201ENST00000471178 356 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC021205.2-201ENST00000480069 347 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC008739.2-201ENST00000597006 317 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC120024.3-201ENST00000603167 156 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 RPL17P51-201ENST00000605218 238 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AP001340.1-201ENST00000624405 217 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC006386.2-201ENST00000624491 75 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 AC012005.1-201ENST00000624575 75 ntBASIC3.89□□□□□ -1.79
CHMP3Q9Y3E7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-915P-201ENST00000364943 103 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-57P-201ENST00000411348 103 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 AC009414.1-201ENST00000427200 443 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 S100A11P2-201ENST00000467589 312 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 RPL23AP54-201ENST00000495129 419 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 MAPK10-362ENST00000641864 4484 ntBASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CHMP3Q9Y3E7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 SNORD114-7-201ENST00000362520 77 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-1323P-201ENST00000384025 107 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-1274P-201ENST00000384557 107 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 MIR29B2-201ENST00000385055 81 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 SNORA75.5-201ENST00000391291 81 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 AC022018.1-201ENST00000430685 241 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 AC103810.1-201ENST00000579873 453 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 MIR4753-201ENST00000585119 83 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 AC023043.3-201ENST00000593113 385 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 snoZ196.1-201ENST00000625269 89 ntBASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.87□□□□□ -1.79
CHMP3Q9Y3E7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 CENPCP1-201ENST00000533085 2578 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SNORA63.4-201ENST00000362763 126 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SNORA71.1-201ENST00000364523 117 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-429P-201ENST00000384582 108 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 Y_RNA.587-201ENST00000391210 103 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 AL135786.1-201ENST00000415892 214 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 EEF1B2P7-201ENST00000451177 676 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 RNU6-437P-201ENST00000459408 95 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 RPS27P26-201ENST00000494583 239 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SNORA31.1-201ENST00000515993 133 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SNORA31.5-201ENST00000516190 133 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SCARNA17.1-201ENST00000516211 143 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SCARNA17.2-201ENST00000516334 143 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 SNORA64.4-201ENST00000516632 81 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 MIR4765-201ENST00000585007 77 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 AC005972.2-201ENST00000604690 348 ntBASIC3.86□□□□□ -1.79
CHMP3Q9Y3E7 U7.2-201ENST00000607576 63 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms