Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC4.22□□□□□ -1.73
VPS9D1Q9Y2B5 FAS-AS1.1-201ENST00000615327 126 ntBASIC4.22□□□□□ -1.73
VPS9D1Q9Y2B5 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VPS9D1Q9Y2B5 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.21□□□□□ -1.73
VPS9D1Q9Y2B5 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
VPS9D1Q9Y2B5 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP388-201ENST00000362584 119 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RNU1-14P-201ENST00000362759 152 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP447-201ENST00000363749 119 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-457P-201ENST00000363999 107 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 AL732292.1-201ENST00000426692 226 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RPS29P17-201ENST00000430795 166 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 Vault.1-201ENST00000516474 102 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-341P-201ENST00000516973 96 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 AL356218.2-201ENST00000605264 187 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 AC103810.7-201ENST00000607821 91 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 U2.20-201ENST00000613956 192 ntBASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
VPS9D1Q9Y2B5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-1313P-201ENST00000362622 102 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-1274P-201ENST00000384557 107 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 SNORD77B-201ENST00000391112 67 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 RN7SKP27-201ENST00000410684 333 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 MAPK10-372ENST00000641954 3413 ntBASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS9D1Q9Y2B5 MAPK10-373ENST00000641983 6772 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 AC073346.2-201ENST00000624724 2058 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 SNORA1.1-201ENST00000364671 133 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP189-201ENST00000364920 115 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-524P-201ENST00000384270 107 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 SNORA11-201ENST00000408789 128 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 AL139247.1-201ENST00000422768 325 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 HMGN2P34-201ENST00000437647 269 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 AL049873.1-201ENST00000480540 376 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 MIR4277-201ENST00000578298 84 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 MIR6079-201ENST00000635807 62 ntBASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS9D1Q9Y2B5 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 UBE3AP2-201ENST00000429033 2259 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 Z98742.2-201ENST00000431564 187 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 SNRPGP14-201ENST00000435400 219 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 HMGN2P18-201ENST00000450680 270 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 RN7SL303P-201ENST00000469773 251 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 S100A11P1-201ENST00000477525 312 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 RPL30P14-201ENST00000482744 348 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 AC093729.1-201ENST00000513074 128 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 SNORA4.4-201ENST00000515921 135 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP49-201ENST00000516450 115 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 AC021613.1-201ENST00000623880 111 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 AL049781.1-201ENST00000623195 3585 ntBASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS9D1Q9Y2B5 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 MIR93-201ENST00000385024 80 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP104-201ENST00000410989 118 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 AC004223.1-201ENST00000479840 271 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 RN7SL691P-201ENST00000494487 301 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 RAC1P2-201ENST00000511164 579 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 AC108729.3-201ENST00000513484 108 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 MIR4284-201ENST00000578924 81 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 MIR3690-201ENST00000580266 75 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 AC093831.2-201ENST00000624393 3427 ntBASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.17□□□□□ -1.74
VPS9D1Q9Y2B5 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-1084P-201ENST00000362498 107 ntBASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 SNORD115-27-201ENST00000364430 82 ntBASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 RNA5SP509-201ENST00000364577 119 ntBASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 RNU6-198P-201ENST00000384258 104 ntBASIC4.16□□□□□ -1.74
VPS9D1Q9Y2B5 Z92545.1-201ENST00000411782 234 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms