Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SNORA53-201ENST00000391141 249 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 RNU4-30P-201ENST00000410245 143 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 RNU1-104P-201ENST00000517280 175 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AC055872.1-201ENST00000570978 278 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AC037487.3-201ENST00000606668 112 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AC127459.3-201ENST00000624328 466 ntBASIC2.7□□□□□ -1.98
LIMCH1Q9UPQ0 AC010615.1-201ENST00000594254 1764 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.101-201ENST00000363154 102 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 SNORA38-201ENST00000363946 132 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-1235P-201ENST00000384559 107 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 AC108059.2-201ENST00000434626 151 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 HSPE1P25-201ENST00000455484 251 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 SNORD127-201ENST00000458892 86 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-498P-201ENST00000459468 107 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 RN7SL636P-201ENST00000497504 294 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 RNA5SP24-201ENST00000516478 95 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 AP002001.1-203ENST00000534002 267 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 AC008749.1-201ENST00000597650 306 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.69□□□□□ -1.98
LIMCH1Q9UPQ0 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AL391987.6-201ENST00000305671 199 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-326P-201ENST00000365480 107 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.476-201ENST00000384347 108 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.541-201ENST00000384640 113 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.569-201ENST00000384749 103 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 EDDM3CP-201ENST00000415977 425 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AL357134.1-201ENST00000445848 426 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC245102.2-201ENST00000448956 180 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-1132P-201ENST00000459214 107 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-221P-201ENST00000459541 99 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC104435.1-201ENST00000483483 166 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 HMGB3P17-201ENST00000504195 649 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC107222.1-201ENST00000510899 637 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RPL23AP94-201ENST00000512518 302 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-155P-201ENST00000516347 100 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 SNORA31.11-201ENST00000516528 139 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-1271P-201ENST00000517049 105 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 RNU2-12P-201ENST00000517216 168 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC023157.2-201ENST00000540596 141 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 PRELID2P1-201ENST00000552837 301 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 AP001282.2-201ENST00000616149 309 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 MIR6852-201ENST00000621699 66 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 CTSLP2-204ENST00000629029 392 ntBASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
LIMCH1Q9UPQ0 MIRLET7G-201ENST00000362280 84 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 AC008134.1-201ENST00000420943 193 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 AC139712.2-201ENST00000424302 339 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 POLR2KP2-201ENST00000438155 177 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 PRELID3BP1-201ENST00000457142 540 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RNU7-26P-201ENST00000458980 63 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RPL39P38-201ENST00000467018 153 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 SNORA4.4-201ENST00000515921 135 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-991P-201ENST00000516168 107 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-1338P-201ENST00000516328 91 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RNU2-31P-201ENST00000516954 155 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-794P-201ENST00000517261 64 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 AC025754.2-201ENST00000606491 432 ntBASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.67□□□□□ -1.98
LIMCH1Q9UPQ0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.99-201ENST00000363138 105 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-454P-201ENST00000364292 107 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 Y_RNA.243-201ENST00000364481 109 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 SNORA67.1-201ENST00000364749 141 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-102P-201ENST00000384485 104 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 SNORA80E-201ENST00000384744 137 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 MIR144-201ENST00000384886 86 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 RNU6-1199P-201ENST00000411249 104 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 AC007064.1-201ENST00000412238 351 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 MTCO1P44-201ENST00000441935 243 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 AC087441.2-201ENST00000529141 262 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 CYCSP26-201ENST00000534107 320 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 AC026271.5-201ENST00000577873 130 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 IGHVIII-44-202ENST00000636235 289 ntBASIC2.66□□□□□ -1.98
LIMCH1Q9UPQ0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
LIMCH1Q9UPQ0 MTND5P6-201ENST00000422338 1798 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.14-201ENST00000362415 103 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 SNORD114-7-201ENST00000362520 77 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1266P-201ENST00000362794 105 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.136-201ENST00000363444 102 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.237-201ENST00000364439 102 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.286-201ENST00000364813 102 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.350-201ENST00000365409 98 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.383-201ENST00000383855 97 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-418P-201ENST00000384035 107 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.478-201ENST00000384358 107 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 Y_RNA.562-201ENST00000384695 113 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 RNU6-1248P-201ENST00000391096 64 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 MIR548H3-201ENST00000408771 118 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 RN7SKP284-201ENST00000411002 343 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 AC024067.1-201ENST00000426199 223 ntBASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.65□□□□□ -1.99
LIMCH1Q9UPQ0 SERF1AP1-201ENST00000514575 187 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms