Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 EBAG9P1-201ENST00000418955 543 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 SNORD65B-201ENST00000459126 73 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC010655.3-201ENST00000478818 450 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.56□□□□□ -2
DDX56Q9NY93 RNU6-1045P-201ENST00000516321 107 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 SNORA31.11-201ENST00000516528 139 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 RNU6-1046P-201ENST00000516538 107 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 RNU6-897P-201ENST00000517135 105 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 IGLV3-17-201ENST00000519099 244 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC008749.1-201ENST00000597650 306 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.56□□□□□ -2
DDX56Q9NY93 AL773524.1-201ENST00000614065 229 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC004467.1-201ENST00000615678 330 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 AC022513.1-201ENST00000624512 117 ntBASIC2.56□□□□□ -2
DDX56Q9NY93 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.56□□□□□ -2
DDX56Q9NY93 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
DDX56Q9NY93 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.55□□□□□ -2
DDX56Q9NY93 Y_RNA.143-201ENST00000363520 106 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 RNU5A-5P-201ENST00000411054 116 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AC010154.1-201ENST00000425857 269 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.55□□□□□ -2
DDX56Q9NY93 RNA5SP233-201ENST00000459153 113 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 RNA5SP320-201ENST00000516263 124 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 RNU1-142P-201ENST00000516682 145 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AP002001.1-203ENST00000534002 267 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AC055872.1-201ENST00000570978 278 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AC136443.5-201ENST00000603741 370 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 MIR7106-201ENST00000612419 65 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 AL359075.3-201ENST00000613288 217 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
DDX56Q9NY93 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
DDX56Q9NY93 CENPCP1-201ENST00000533085 2578 ntBASIC2.55□□□□□ -2
DDX56Q9NY93 Y_RNA.214-201ENST00000364201 112 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 SNORA8-201ENST00000384574 139 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 AC244636.1-201ENST00000421152 228 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 ELOCP20-201ENST00000422460 345 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 AC099677.2-201ENST00000436385 175 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 MTND5P22-201ENST00000458380 195 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 MRPS35P2-201ENST00000508242 191 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 SUB1P4-201ENST00000566062 339 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 LARP7P3-201ENST00000579888 337 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 AL033523.1-201ENST00000605153 153 ntBASIC2.54□□□□□ -2
DDX56Q9NY93 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.54□□□□□ -2
DDX56Q9NY93 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
DDX56Q9NY93 AC062016.1-201ENST00000355719 319 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 Y_RNA.287-201ENST00000364853 94 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 Y_RNA.462-201ENST00000384268 102 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 MIR196B-201ENST00000384852 84 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 AL359511.1-201ENST00000402970 211 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 NDUFB4P4-201ENST00000404822 243 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 RNA5SP184-201ENST00000411071 108 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.53□□□□□ -2
DDX56Q9NY93 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.53□□□□□ -2
DDX56Q9NY93 AC073910.1-201ENST00000445047 438 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 MIR4319-201ENST00000577285 85 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 AC091932.3-201ENST00000624223 323 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 AC006386.2-201ENST00000624491 75 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 AC012005.1-201ENST00000624575 75 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 U6.115-201ENST00000636045 103 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 AC016717.2-201ENST00000609089 5141 ntBASIC2.53□□□□□ -2
DDX56Q9NY93 MTND5P6-201ENST00000422338 1798 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 AC010615.1-201ENST00000594254 1764 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 Y_RNA.152-201ENST00000363578 100 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 Y_RNA.183-201ENST00000363882 113 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 SNORD114-30-201ENST00000364448 72 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 RNU6-937P-201ENST00000384325 106 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 AC005002.2-201ENST00000438228 269 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.52□□□□□ -2.01
DDX56Q9NY93 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.52□□□□□ -2.01
DDX56Q9NY93 RPS27P22-201ENST00000478056 241 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 RPS27P21-201ENST00000486977 252 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 RNA5SP356-201ENST00000515972 94 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 SNORA70.12-201ENST00000516084 153 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 RNY3P15-201ENST00000516297 97 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.52□□□□□ -2.01
DDX56Q9NY93 AC067747.1-201ENST00000608026 250 ntBASIC2.52□□□□□ -2.01
DDX56Q9NY93 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
DDX56Q9NY93 AL596028.1-201ENST00000326971 197 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 MIR21-201ENST00000362134 72 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 SNORD114-7-201ENST00000362520 77 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 SNORA80A-201ENST00000363922 136 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 RNU6-806P-201ENST00000365147 105 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 SNORA20B-201ENST00000384220 132 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 MIR518C-201ENST00000384822 101 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 MIR520A-201ENST00000384862 85 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 MIR144-201ENST00000384886 86 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 RNU2-54P-201ENST00000410299 190 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 RNU2-7P-201ENST00000410794 178 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 RPS15AP28-201ENST00000435088 386 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 SNORA40.15-201ENST00000516884 107 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 RNA5SP402-201ENST00000517148 110 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.51□□□□□ -2.01
DDX56Q9NY93 EIF4BP1-201ENST00000554881 351 ntBASIC2.51□□□□□ -2.01
DDX56Q9NY93 AC136932.1-201ENST00000574771 208 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 177.8 ms