Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 MIR3684-201ENST00000579779 74 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 MIR3683-201ENST00000580847 82 ntBASIC1.77□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.61-201ENST00000362835 102 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.415-201ENST00000384012 112 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.428-201ENST00000384078 102 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 RNY3P4-201ENST00000384428 101 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 MIR597-201ENST00000384968 97 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1001P-201ENST00000411265 100 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AC060773.1-201ENST00000421698 310 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 ATP5J2P3-201ENST00000451550 258 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 PCNPP5-201ENST00000452246 481 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.639-201ENST00000458981 102 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 U8.22-201ENST00000459141 133 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 RNU7-87P-201ENST00000459343 62 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AC107393.1-201ENST00000512403 346 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 SNORD116.3-201ENST00000517176 78 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AC025647.1-201ENST00000517879 253 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AL442163.3-201ENST00000554110 156 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 MIR3935-201ENST00000583472 104 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AC005034.5-201ENST00000604219 466 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AL773524.1-201ENST00000614065 229 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 AL138825.1-201ENST00000618587 192 ntBASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
CCDC3Q9BQI4 SNORA16.1-201ENST00000364597 132 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 SNORD42.2-201ENST00000365570 69 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1264P-201ENST00000383891 107 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 SNORA8-201ENST00000384574 139 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 MIR676-201ENST00000390702 67 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AL117342.1-201ENST00000404861 406 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNA5SP338-201ENST00000410495 85 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNA5SP501-201ENST00000410990 112 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 ELOCP21-201ENST00000412558 336 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC009310.1-201ENST00000414414 451 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC011406.1-201ENST00000512440 370 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1170P-201ENST00000515974 106 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1146P-201ENST00000516282 102 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 RNU6-250P-201ENST00000516958 103 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC022868.1-201ENST00000517767 391 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 SUB1P4-201ENST00000566062 339 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 MIR4498-201ENST00000577599 66 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AC010900.2-201ENST00000604508 210 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 AP000553.5-201ENST00000641933 54 ntBASIC1.75□□□□□ -2.13
CCDC3Q9BQI4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.4-201ENST00000362333 112 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.5-201ENST00000362334 102 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 RNU6-457P-201ENST00000363999 107 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 RNU6-879P-201ENST00000364328 108 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 RNU4-42P-201ENST00000364738 142 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 MIR515-2-201ENST00000384883 83 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 MIR515-1-201ENST00000384884 83 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 MRPS18CP6-201ENST00000423587 223 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 CST2P1-201ENST00000425770 87 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AC105758.1-201ENST00000506038 399 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 RNU1-117P-201ENST00000517041 158 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AC023442.1-201ENST00000531247 422 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 VN1R91P-201ENST00000594377 169 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AL080274.1-201ENST00000605565 220 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AL050343.2-201ENST00000607338 280 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 AC006435.5-201ENST00000624486 112 ntBASIC1.74□□□□□ -2.13
CCDC3Q9BQI4 RNU6-797P-201ENST00000363101 109 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.238-201ENST00000364441 102 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 SNORD87-201ENST00000364849 89 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1240P-201ENST00000365155 104 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.460-201ENST00000384255 102 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.579-201ENST00000390939 94 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 RPS20P15-201ENST00000412792 311 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 MTCO3P19-201ENST00000415864 321 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AL445305.1-201ENST00000432577 575 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AL137792.2-201ENST00000443484 235 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AC016717.1-201ENST00000448918 286 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 RNU6-1053P-201ENST00000515930 101 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 RNU6-475P-201ENST00000516073 104 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AP005660.1-201ENST00000522972 293 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AC022254.1-201ENST00000567857 235 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 AC083806.3-201ENST00000614016 455 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 U2.1-201ENST00000618978 145 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 MIR338-201ENST00000636369 67 ntBASIC1.73□□□□□ -2.13
CCDC3Q9BQI4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 MIR378A-201ENST00000362177 66 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 snoU2-30.2-201ENST00000362805 70 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 RNU6-727P-201ENST00000363592 107 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.314-201ENST00000365114 102 ntBASIC1.72□□□□□ -2.13
CCDC3Q9BQI4 Y_RNA.535-201ENST00000384612 99 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms