Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RN7SKP43-201ENST00000516173 320 ntBASIC3.95□□□□□ -1.78
TRERF1Q96PN7 AC005972.2-201ENST00000604690 348 ntBASIC3.95□□□□□ -1.78
TRERF1Q96PN7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
TRERF1Q96PN7 AC000403.1-201ENST00000613696 3585 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 SNORD114-7-201ENST00000362520 77 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 RNU2-37P-201ENST00000410695 177 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 AC006989.1-201ENST00000427212 131 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 AL021397.1-201ENST00000451806 248 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 RPL23AP62-201ENST00000463396 453 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 RPL30P14-201ENST00000482744 348 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 PHBP14-201ENST00000512887 367 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 HSPE1P18-201ENST00000517602 280 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 RPS15AP11-201ENST00000594193 385 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 AC097639.2-201ENST00000603159 172 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 MIR7112-201ENST00000616126 65 ntBASIC3.94□□□□□ -1.78
TRERF1Q96PN7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TRERF1Q96PN7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 AL356274.2-201ENST00000624379 3752 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 SNORA38.1-201ENST00000364172 131 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 RNU6-440P-201ENST00000390882 105 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 MIR891A-201ENST00000401237 79 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 EDDM3CP-201ENST00000415977 425 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 RPS26P55-201ENST00000471178 356 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 RNU1-61P-201ENST00000516107 151 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 SNORA40.13-201ENST00000516379 120 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 RNA5SP153-201ENST00000516498 76 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 RNU7-116P-201ENST00000516940 62 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 YPEL5P2-201ENST00000605553 359 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 AL035470.1-201ENST00000622571 220 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 MIR3199-2-201ENST00000636243 86 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 MIR7153-201ENST00000637758 57 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 AC103988.1-201ENST00000566382 2177 ntBASIC3.93□□□□□ -1.78
TRERF1Q96PN7 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRERF1Q96PN7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
TRERF1Q96PN7 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
TRERF1Q96PN7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.92□□□□□ -1.78
TRERF1Q96PN7 SNORA27.1-201ENST00000362604 124 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AL590004.2-201ENST00000404787 371 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 MIR1302-5-201ENST00000408164 150 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AC115115.1-201ENST00000449927 248 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 snoU13.14-201ENST00000459372 104 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 SNORD77.4-201ENST00000516158 81 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AC025647.1-201ENST00000517879 253 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AC026333.2-201ENST00000542164 106 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AC002076.2-201ENST00000617362 122 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.92□□□□□ -1.78
TRERF1Q96PN7 CEP170P1-201ENST00000502249 4587 ntBASIC3.92□□□□□ -1.78
TRERF1Q96PN7 AF117829.1-206ENST00000621883 3802 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RNU6-283P-201ENST00000364788 107 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RNA5SP252-201ENST00000391131 119 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AC107626.1-201ENST00000471084 183 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RPL36AP21-201ENST00000490372 323 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RN7SKP12-201ENST00000516275 143 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RNU6-109P-201ENST00000516364 107 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RNU6-184P-201ENST00000516514 107 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AC004944.1-201ENST00000517807 3059 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 MIR4276-201ENST00000584832 70 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AL929325.1-201ENST00000603096 117 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AC091152.3-201ENST00000604227 325 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 AL442128.1-201ENST00000615151 90 ntBASIC3.91□□□□□ -1.78
TRERF1Q96PN7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
TRERF1Q96PN7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TRERF1Q96PN7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.9□□□□□ -1.78
TRERF1Q96PN7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TRERF1Q96PN7 Z83843.1-201ENST00000604070 3685 ntBASIC3.9□□□□□ -1.78
TRERF1Q96PN7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
TRERF1Q96PN7 RNU6-1014P-201ENST00000383940 103 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 MIR586-201ENST00000385035 97 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 RNA5SP38-201ENST00000410750 119 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 HMGN2P9-201ENST00000476875 229 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 RPL39P34-201ENST00000477141 156 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 SNORA18.4-201ENST00000516440 124 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 AC027419.1-201ENST00000522976 328 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.9□□□□□ -1.79
TRERF1Q96PN7 AC005000.2-201ENST00000605468 310 ntBASIC3.9□□□□□ -1.79
TRERF1Q96PN7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TRERF1Q96PN7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
TRERF1Q96PN7 MIR30E-201ENST00000362104 92 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 snoU2_19.1-201ENST00000362361 80 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 RNU6-1010P-201ENST00000362757 107 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 RNU6-198P-201ENST00000384258 104 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 SNORD14D-201ENST00000384390 87 ntBASIC3.89□□□□□ -1.79
TRERF1Q96PN7 SNORA1.3-201ENST00000384676 136 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms