Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.111-201ENST00000363248 100 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 RNU6-245P-201ENST00000384020 107 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.498-201ENST00000384460 102 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 SNORD67-201ENST00000390833 111 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 RNU2-32P-201ENST00000411193 191 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AL135790.2-201ENST00000437701 267 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AP001486.1-201ENST00000463339 476 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AL049873.1-201ENST00000480540 376 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 RNU7-121P-201ENST00000516604 62 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AC100767.1-201ENST00000528178 123 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 RPL12P50-201ENST00000603116 116 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 RPL17P51-201ENST00000605218 238 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 AC091895.1-201ENST00000624494 256 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 FO624990.1-201ENST00000636373 85 ntBASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CLIP3Q96DZ5 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC100821.1-201ENST00000523153 2479 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 MIR22-201ENST00000362190 85 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU5F-3P-201ENST00000363767 117 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.182-201ENST00000363880 111 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.329-201ENST00000365209 107 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU4-17P-201ENST00000365598 141 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU6-1072P-201ENST00000384703 107 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU6-417P-201ENST00000384712 107 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU6-443P-201ENST00000384780 107 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 MIR320B2-201ENST00000408479 138 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 U8.19-201ENST00000459095 133 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC103975.1-201ENST00000482506 483 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC010409.1-201ENST00000487382 476 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 RNU2-12P-201ENST00000517216 168 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC022616.8-201ENST00000533569 253 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AC093732.2-201ENST00000607950 274 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.778-201ENST00000620203 90 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 AL137790.1-201ENST00000634283 177 ntBASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.93□□□□□ -1.94
CLIP3Q96DZ5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RNU6-454P-201ENST00000364292 107 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RNU6-275P-201ENST00000364910 107 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RNU6-763P-201ENST00000390865 106 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RNU6-381P-201ENST00000391259 108 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 AL139095.1-201ENST00000404326 391 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.629-201ENST00000411368 105 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RPL32P35-201ENST00000415214 394 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 RNU6-436P-201ENST00000516171 114 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 EIF4BP1-201ENST00000554881 351 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 SNRPGP20-201ENST00000604477 205 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 MIR3674-201ENST00000636576 68 ntBASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.92□□□□□ -1.94
CLIP3Q96DZ5 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 RNU1-62P-201ENST00000362599 164 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 SNORA38-201ENST00000363946 132 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 RNU6-801P-201ENST00000364087 105 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 RNU6-151P-201ENST00000364158 107 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 RNU6-1310P-201ENST00000384153 107 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 SNORA44-201ENST00000384584 132 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 RNA5SP217-201ENST00000515959 91 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 MIR4446-201ENST00000578505 67 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 AC005562.2-201ENST00000618264 111 ntBASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CLIP3Q96DZ5 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.9□□□□□ -1.94
CLIP3Q96DZ5 VTRNA1-1-201ENST00000363120 99 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 RNU6-727P-201ENST00000363592 107 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 RNA5SP205-201ENST00000364653 136 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 Y_RNA.357-201ENST00000365487 109 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 RNU6-239P-201ENST00000390990 99 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 U3.40-201ENST00000408706 208 ntBASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.9□□□□□ -1.95
CLIP3Q96DZ5 AC027124.2-201ENST00000428249 105 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms