Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU7-99P-201ENST00000516271 62 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 RNU6-1332P-201ENST00000516666 104 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC026371.1-201ENST00000551867 419 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AL158211.1-201ENST00000566763 763 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 FRG2DP-202ENST00000566967 323 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.66□□□□□ -2.3
LMX1AQ8TE12 MIR4653-201ENST00000585107 83 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AL158209.2-201ENST00000619266 216 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AL513423.1-201ENST00000621695 132 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 AC068647.2-201ENST00000637380 353 ntBASIC0.66□□□□□ -2.3
LMX1AQ8TE12 RNA5SP325-201ENST00000363756 130 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.231-201ENST00000364358 102 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.359-201ENST00000365498 102 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.409-201ENST00000383990 98 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 RNU6-1119P-201ENST00000384349 108 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 MIR193B-201ENST00000384907 83 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 SNORD37.1-201ENST00000390968 65 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 RNA5SP323-201ENST00000391094 133 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 MRPL42P3-201ENST00000401492 326 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.65□□□□□ -2.31
LMX1AQ8TE12 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC005002.2-201ENST00000438228 269 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.65□□□□□ -2.31
LMX1AQ8TE12 RNU7-187P-201ENST00000458985 68 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 ACA64.5-201ENST00000516207 127 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 SCARNA16.2-201ENST00000516520 172 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 RNU6-1198P-201ENST00000516904 67 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC027288.2-201ENST00000553028 243 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC006362.1-201ENST00000567392 174 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC022432.1-201ENST00000595739 310 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 AC068137.3-201ENST00000639191 341 ntBASIC0.65□□□□□ -2.31
LMX1AQ8TE12 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
LMX1AQ8TE12 RNA5SP347-201ENST00000362445 119 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 RNU4-41P-201ENST00000364426 143 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 RNU4-9P-201ENST00000364951 139 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 RNU6-505P-201ENST00000384427 107 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AC005534.2-201ENST00000431047 433 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 Z82188.1-201ENST00000436709 154 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.64□□□□□ -2.31
LMX1AQ8TE12 MTND1P11-201ENST00000456661 876 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AL162424.1-201ENST00000602325 221 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AC245008.1-201ENST00000608123 476 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AC124864.2-201ENST00000624736 186 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 AC090582.1-201ENST00000636321 199 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 MIR3974-201ENST00000637126 96 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 MTND4P12-201ENST00000498999 1377 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 MTND5P26-201ENST00000426018 1752 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 ELL2P3-201ENST00000457883 1602 ntBASIC0.64□□□□□ -2.31
LMX1AQ8TE12 SNORD114-23-201ENST00000363536 72 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 MIR660-201ENST00000385235 97 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 SNORD12-201ENST00000391002 90 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 MIR936-201ENST00000401264 98 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 RNU2-64P-201ENST00000411315 191 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC245047.3-201ENST00000429428 127 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 ERLEC1P1-201ENST00000433806 578 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC083904.1-201ENST00000487828 231 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 MTCO2P30-201ENST00000503662 364 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.63□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.693-201ENST00000516641 110 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 SNORA70.22-201ENST00000517160 124 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 RNA5SP454-201ENST00000517231 127 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 MIR5696-201ENST00000578474 85 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AL359880.1-201ENST00000621879 266 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC078883.4-201ENST00000623218 367 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 AC097520.1-201ENST00000624435 385 ntBASIC0.63□□□□□ -2.31
LMX1AQ8TE12 HSBP1P2-201ENST00000299671 229 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 Y_RNA.100-201ENST00000363141 102 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6-1085P-201ENST00000363576 107 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 SNORD87-201ENST00000364849 89 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6-933P-201ENST00000384424 107 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6-95P-201ENST00000384697 107 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 MIR32-201ENST00000384965 70 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6-159P-201ENST00000391080 106 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AL590002.1-201ENST00000406554 418 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AL034345.1-201ENST00000407768 123 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU6-1068P-201ENST00000410958 103 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.62□□□□□ -2.31
LMX1AQ8TE12 MTND5P15-201ENST00000434246 349 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AL353572.1-201ENST00000442490 417 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU7-94P-201ENST00000459576 63 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 TRBVA-201ENST00000498804 316 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 SNORA25.14-201ENST00000516481 132 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 RNU1-117P-201ENST00000517041 158 ntBASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.62□□□□□ -2.31
LMX1AQ8TE12 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.62□□□□□ -2.31
LMX1AQ8TE12 PIGPP4-201ENST00000584447 307 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 120.5 ms