Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 RN7SKP210-201ENST00000459176 261 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AC018710.1-201ENST00000506509 158 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 RNU6-1114P-201ENST00000516022 107 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AC005668.1-201ENST00000571142 476 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 MIR3660-201ENST00000584845 100 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AL365434.2-201ENST00000607979 234 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AC009229.3-201ENST00000608056 282 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AC010999.1-201ENST00000611856 324 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AL121890.5-201ENST00000620848 304 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AL359697.1-201ENST00000624879 587 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 AC027514.1-201ENST00000588561 1603 ntBASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC54Q8NEL0 Y_RNA.279-201ENST00000364763 95 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 RNU6-1145P-201ENST00000384246 107 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 Y_RNA.557-201ENST00000384680 107 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 SNORA40.6-201ENST00000391153 128 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 MRPL35P1-201ENST00000404272 572 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AL135790.2-201ENST00000437701 267 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 RPL36AP21-201ENST00000490372 323 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 RNU7-30P-201ENST00000516835 62 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 RNU6-1198P-201ENST00000516904 67 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 MTND4LP26-201ENST00000518144 282 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AC024995.1-201ENST00000523014 93 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AC093023.1-201ENST00000547375 507 ntBASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.09□□□□□ -2.23
CCDC54Q8NEL0 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.09□□□□□ -2.24
CCDC54Q8NEL0 RNU6-454P-201ENST00000364292 107 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 SNORA25.8-201ENST00000364831 128 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.490-201ENST00000384413 102 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.505-201ENST00000384489 102 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 RNU6-510P-201ENST00000391239 108 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 MIR190B-201ENST00000401119 79 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 MIR320B2-201ENST00000408479 138 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 EBAG9P1-201ENST00000418955 543 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC027419.1-201ENST00000522976 328 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AP003033.1-201ENST00000527244 415 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC073413.2-201ENST00000604332 360 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AL512598.1-201ENST00000610158 273 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC093913.1-201ENST00000614178 329 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AL078604.3-201ENST00000615580 211 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 MIR8054-201ENST00000620877 86 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AC098679.4-201ENST00000624241 654 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 AL359757.2-201ENST00000624309 274 ntBASIC1.08□□□□□ -2.24
CCDC54Q8NEL0 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNY1P16-201ENST00000363063 111 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNU6-280P-201ENST00000364145 104 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.248-201ENST00000364501 109 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 SNORA72.2-201ENST00000365028 127 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNU6-601P-201ENST00000384540 107 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNU6-1031P-201ENST00000384773 107 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 MIR1253-201ENST00000408273 105 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNU6-1186P-201ENST00000410429 97 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.619-201ENST00000410951 90 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AC074085.1-201ENST00000413598 418 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AC008134.1-201ENST00000420943 193 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 USP9YP16-201ENST00000430287 407 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AL121890.1-201ENST00000435457 205 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 USP9YP23-201ENST00000455085 407 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AC046134.1-201ENST00000514454 666 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 RNU6-1146P-201ENST00000516282 102 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 SCARNA16.2-201ENST00000516520 172 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AC023157.2-201ENST00000540596 141 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 MIR4709-201ENST00000577272 72 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 AL359075.3-201ENST00000613288 217 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 CASC19-280ENST00000642102 1351 ntBASIC1.07□□□□□ -2.24
CCDC54Q8NEL0 Y_RNA.2-201ENST00000362330 96 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 MIR515-2-201ENST00000384883 83 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 MIR515-1-201ENST00000384884 83 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AL139396.1-201ENST00000421137 167 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 MRPL35P3-201ENST00000421557 364 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC069257.2-201ENST00000441819 155 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 RN7SL429P-201ENST00000479090 223 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC004223.1-201ENST00000479840 271 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 RN7SL489P-201ENST00000486185 223 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 RN7SL327P-201ENST00000488659 223 ntBASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC54Q8NEL0 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms