Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.99□□□□□ -2.09
BEST3Q8N1M1 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
BEST3Q8N1M1 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-23P-201ENST00000363283 107 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-961P-201ENST00000363893 105 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNA5SP493-201ENST00000364115 91 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-450P-201ENST00000364654 107 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 Y_RNA.439-201ENST00000384119 94 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 Y_RNA.527-201ENST00000384573 102 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 MIR1289-2-201ENST00000408360 111 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-985P-201ENST00000410182 104 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.98□□□□□ -2.09
BEST3Q8N1M1 AC008134.1-201ENST00000420943 193 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RPEP5-201ENST00000441137 268 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-764P-201ENST00000516396 105 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 SNORA31.25-201ENST00000517242 134 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 AC009127.3-201ENST00000570531 403 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 AC022432.1-201ENST00000595739 310 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.98□□□□□ -2.09
BEST3Q8N1M1 AL590240.4-201ENST00000616908 390 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 MIR219B-201ENST00000637023 88 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 AL159152.1-201ENST00000635019 2587 ntBASIC1.98□□□□□ -2.09
BEST3Q8N1M1 RNU6-626P-201ENST00000363354 107 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 Y_RNA.230-201ENST00000364348 109 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 RNU6-1160P-201ENST00000384546 104 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 RNA5SP465-201ENST00000391195 109 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 BX510359.4-201ENST00000423750 193 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 HMGN2P3-201ENST00000433603 273 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 HMGN2P5-201ENST00000436882 273 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 AL353689.1-201ENST00000438895 199 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 RNU6-1137P-201ENST00000517073 99 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 MIR3169-201ENST00000578032 83 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 MIR4529-201ENST00000578110 78 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 MIR3684-201ENST00000579779 74 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 AC113195.1-201ENST00000579952 141 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 AL109918.3-201ENST00000603072 338 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 AL353621.2-201ENST00000605340 133 ntBASIC1.97□□□□□ -2.09
BEST3Q8N1M1 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.97□□□□□ -2.09
BEST3Q8N1M1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
BEST3Q8N1M1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
BEST3Q8N1M1 Y_RNA.152-201ENST00000363578 100 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 RNU6-20P-201ENST00000384106 107 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 MIR606-201ENST00000384851 96 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 SNORA48.3-201ENST00000391081 134 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 RNU11-3P-201ENST00000391111 133 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 SNORD23.1-201ENST00000408212 104 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AC079804.2-201ENST00000490376 200 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AC025647.1-201ENST00000517879 253 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AC005176.2-201ENST00000596933 147 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AL355297.3-201ENST00000604082 446 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 AL021879.1-201ENST00000611756 288 ntBASIC1.96□□□□□ -2.1
BEST3Q8N1M1 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
BEST3Q8N1M1 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
BEST3Q8N1M1 RNU6-1266P-201ENST00000362794 105 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 SNORA72.2-201ENST00000365028 127 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 RNU6-1240P-201ENST00000365155 104 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
BEST3Q8N1M1 Y_RNA.462-201ENST00000384268 102 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AC060773.1-201ENST00000421698 310 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AC073910.1-201ENST00000445047 438 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 RNU6-1146P-201ENST00000516282 102 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AC078899.2-201ENST00000595282 212 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 PART1_1.1-201ENST00000611761 217 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 MIR6840-201ENST00000611937 71 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AC004467.1-201ENST00000615678 330 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 AC006001.4-201ENST00000622243 395 ntBASIC1.95□□□□□ -2.1
BEST3Q8N1M1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
BEST3Q8N1M1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
BEST3Q8N1M1 RNU4-52P-201ENST00000384209 138 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 MIR1283-2-201ENST00000408621 87 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 RNU5A-5P-201ENST00000411054 116 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AL390729.2-201ENST00000416137 156 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
BEST3Q8N1M1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AC011406.1-201ENST00000512440 370 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 SUMO2P18-201ENST00000518873 252 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AP002001.1-203ENST00000534002 267 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AC005786.1-201ENST00000588553 154 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 AC012640.5-201ENST00000623897 319 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.94□□□□□ -2.1
BEST3Q8N1M1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
BEST3Q8N1M1 Y_RNA.183-201ENST00000363882 113 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 RNU6-454P-201ENST00000364292 107 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 SNORD63-201ENST00000384262 68 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 MIR1253-201ENST00000408273 105 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 RNU6-130P-201ENST00000411112 103 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.93□□□□□ -2.1
BEST3Q8N1M1 AC005002.2-201ENST00000438228 269 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 SCARNA15.1-201ENST00000516384 125 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 RNU2-19P-201ENST00000517288 84 ntBASIC1.93□□□□□ -2.1
BEST3Q8N1M1 AP005660.1-201ENST00000522972 293 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 1971.7 ms