Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNA5SP208-201ENST00000516156 78 ntBASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 MIR4458-201ENST00000578872 75 ntBASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 MIR3117-201ENST00000584034 78 ntBASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 MIR6715B-201ENST00000637172 77 ntBASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 LINC02471-203ENST00000641941 4752 ntBASIC3.87□□□□□ -1.79
NPAS3Q8IXF0 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 snoU2_19.1-201ENST00000362361 80 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 SNORD9-201ENST00000362566 104 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 SNORA11.2-201ENST00000408318 127 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 RNU6-887P-201ENST00000410660 100 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 RNU6-57P-201ENST00000411348 103 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AL356535.1-201ENST00000440335 398 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AC114801.3-201ENST00000510231 177 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 Y_RNA.705-201ENST00000516862 110 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AC011602.1-201ENST00000546484 331 ntBASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
NPAS3Q8IXF0 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 Y_RNA.621-201ENST00000411065 96 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 AC244098.2-201ENST00000422068 99 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 AC016717.1-201ENST00000448918 286 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 RPS27P22-201ENST00000478056 241 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 RNU7-70P-201ENST00000516941 66 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 AC022217.4-201ENST00000604389 163 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 AC145423.2-201ENST00000610631 239 ntBASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NPAS3Q8IXF0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU6-590P-201ENST00000365039 107 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 SNORD24-201ENST00000383884 75 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU6-1279P-201ENST00000383917 103 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU6-409P-201ENST00000384114 104 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU4-69P-201ENST00000410677 143 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 AC107626.1-201ENST00000471084 183 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU2-35P-201ENST00000516446 142 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU5F-4P-201ENST00000516581 114 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RNU6-1098P-201ENST00000516772 96 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 MIR3618-201ENST00000580330 88 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 MIR4305-201ENST00000583252 102 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 RPS15AP11-201ENST00000594193 385 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 AL137849.1-201ENST00000604767 169 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 Y_RNA.773-201ENST00000607168 90 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 MIR203B-201ENST00000636080 86 ntBASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
NPAS3Q8IXF0 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
NPAS3Q8IXF0 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
NPAS3Q8IXF0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
NPAS3Q8IXF0 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
NPAS3Q8IXF0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 RNU6-509P-201ENST00000363519 107 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 RNA5SP50-201ENST00000363731 107 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 SNORD45B-201ENST00000364617 72 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 RNU6-616P-201ENST00000384353 107 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 RNA5SP424-201ENST00000390988 115 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC063976.3-201ENST00000426849 329 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC009414.1-201ENST00000427200 443 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 BX510359.1-201ENST00000456973 237 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 HMGB1P22-201ENST00000505315 124 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 SCARNA13-201ENST00000516672 275 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 RNU6-1282P-201ENST00000516735 96 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 MIR4712-201ENST00000583750 82 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 ELOCP29-201ENST00000588193 334 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC087741.2-201ENST00000619415 172 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 MIR3651-201ENST00000630427 90 ntBASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.83□□□□□ -1.8
NPAS3Q8IXF0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
NPAS3Q8IXF0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms