Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HMGN2P7-201ENST00000456186 273 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RPL27AP5-201ENST00000469428 449 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 UBE2DNL-203ENST00000474922 222 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RPS27P22-201ENST00000478056 241 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 MIR449C-201ENST00000516047 92 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-948P-201ENST00000516374 107 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 SNORA70.18-201ENST00000516696 98 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 AP000553.6-201ENST00000641242 118 ntBASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SH3RF1Q7Z6J0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 SNORA38.1-201ENST00000364172 131 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.220-201ENST00000364244 109 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 Y_RNA.323-201ENST00000365157 109 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-813P-201ENST00000384691 107 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 MIR3074-201ENST00000384885 81 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 RNA5SP354-201ENST00000391247 136 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 MIR1263-201ENST00000408324 86 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 RHEBP3-201ENST00000411920 351 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 EIF4EP4-201ENST00000424916 578 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 AC016717.1-201ENST00000448918 286 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 RNU6-579P-201ENST00000516879 102 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 AC012531.5-201ENST00000611375 151 ntBASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SH3RF1Q7Z6J0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SH3RF1Q7Z6J0 CEP170P1-201ENST00000502249 4587 ntBASIC4.09□□□□□ -1.76
SH3RF1Q7Z6J0 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-234P-201ENST00000365229 104 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 Y_RNA.528-201ENST00000384575 108 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 MIR570-201ENST00000384917 97 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 MIR891A-201ENST00000401237 79 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 AC006989.1-201ENST00000427212 131 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 AF228730.3-201ENST00000436691 102 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 SNRPGP3-201ENST00000469405 227 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 OR9P1P-201ENST00000496431 281 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 RNA5SP395-201ENST00000516567 118 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-365P-201ENST00000517113 106 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 AC010680.1-201ENST00000590024 3590 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 AC000403.1-201ENST00000613696 3585 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 JPX_2.1-201ENST00000614161 69 ntBASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.08□□□□□ -1.76
SH3RF1Q7Z6J0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-117P-201ENST00000365415 107 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 MIR1289-1-201ENST00000408836 144 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 Z98742.2-201ENST00000431564 187 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 SNORD11-201ENST00000459124 84 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 AC025518.1-201ENST00000479856 347 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RPS29P21-201ENST00000496272 170 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RNU2-27P-201ENST00000516185 142 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-1146P-201ENST00000516282 102 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 RNU7-149P-201ENST00000516739 59 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 AC109329.2-201ENST00000519658 482 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 AL365205.2-201ENST00000594586 68 ntBASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SH3RF1Q7Z6J0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 DBIP2-201ENST00000419076 262 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 RPL39P34-201ENST00000477141 156 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 AC021205.2-201ENST00000480069 347 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 ATP5EP1-201ENST00000510257 156 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-158P-201ENST00000517104 100 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 AC013412.1-201ENST00000610687 192 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 MIR7112-201ENST00000616126 65 ntBASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
SH3RF1Q7Z6J0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 RNA5SP295-201ENST00000362655 121 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 SNORD31B-201ENST00000364977 69 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-1240P-201ENST00000365155 104 ntBASIC4.05□□□□□ -1.76
SH3RF1Q7Z6J0 RNU6-1138P-201ENST00000365359 106 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms