Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 U2.15-201ENST00000611544 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.16-201ENST00000613119 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.12-201ENST00000613778 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.20-201ENST00000613956 192 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.9-201ENST00000615427 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.11-201ENST00000616345 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.2-201ENST00000616535 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.3-201ENST00000617785 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.19-201ENST00000618602 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 RNU2-1-201ENST00000618664 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.6-201ENST00000619225 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.5-201ENST00000619465 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 U2.10-201ENST00000620268 191 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 SDR42E1P4-201ENST00000620894 481 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.02□□□□□ -1.93
SF3A1Q15459 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
SF3A1Q15459 Y_RNA.47-201ENST00000362697 108 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 SNORD115-30-201ENST00000364117 82 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 Y_RNA.222-201ENST00000364264 102 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 RNU6-102P-201ENST00000384485 104 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
SF3A1Q15459 AL031003.1-201ENST00000404229 172 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 SNORD23.1-201ENST00000408212 104 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 U3.40-201ENST00000408706 208 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.01□□□□□ -1.93
SF3A1Q15459 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.01□□□□□ -1.93
SF3A1Q15459 POLR2KP2-201ENST00000438155 177 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.01□□□□□ -1.93
SF3A1Q15459 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.01□□□□□ -1.93
SF3A1Q15459 RPS27P22-201ENST00000478056 241 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.01□□□□□ -1.93
SF3A1Q15459 AC009127.3-201ENST00000570531 403 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 AC005786.1-201ENST00000588553 154 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.01□□□□□ -1.93
SF3A1Q15459 RNU4-90P-201ENST00000362773 141 ntBASIC3□□□□□ -1.93
SF3A1Q15459 Y_RNA.243-201ENST00000364481 109 ntBASIC3□□□□□ -1.93
SF3A1Q15459 Y_RNA.286-201ENST00000364813 102 ntBASIC3□□□□□ -1.93
SF3A1Q15459 AL355796.1-201ENST00000406706 323 ntBASIC3□□□□□ -1.93
SF3A1Q15459 SNORA11.4-201ENST00000408823 129 ntBASIC3□□□□□ -1.93
SF3A1Q15459 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3□□□□□ -1.93
SF3A1Q15459 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3□□□□□ -1.93
SF3A1Q15459 AL121890.1-201ENST00000435457 205 ntBASIC3□□□□□ -1.93
SF3A1Q15459 MTND3P2-201ENST00000438452 342 ntBASIC3□□□□□ -1.93
SF3A1Q15459 SUMO1P2-201ENST00000452524 304 ntBASIC3□□□□□ -1.93
SF3A1Q15459 RN7SKP132-201ENST00000516001 208 ntBASIC3□□□□□ -1.93
SF3A1Q15459 AC023157.2-201ENST00000540596 141 ntBASIC3□□□□□ -1.93
SF3A1Q15459 MIR3162-201ENST00000581818 82 ntBASIC3□□□□□ -1.93
SF3A1Q15459 AC007229.1-201ENST00000590455 412 ntBASIC3□□□□□ -1.93
SF3A1Q15459 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3□□□□□ -1.93
SF3A1Q15459 MTND5P6-201ENST00000422338 1798 ntBASIC3□□□□□ -1.93
SF3A1Q15459 RNU6-862P-201ENST00000362804 105 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 RNU6-271P-201ENST00000363858 105 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 Y_RNA.581-201ENST00000391017 97 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 MIR1302-3-201ENST00000408128 138 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 RNU6-1199P-201ENST00000411249 104 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 AC096920.1-201ENST00000423991 241 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 AL137100.2-201ENST00000555786 315 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 AL353149.1-201ENST00000610667 244 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 AC012640.5-201ENST00000623897 319 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 MIR338-201ENST00000636369 67 ntBASIC2.99□□□□□ -1.93
SF3A1Q15459 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SF3A1Q15459 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
SF3A1Q15459 Y_RNA.133-201ENST00000363428 110 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 RNU1-96P-201ENST00000364163 162 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 MIR215-201ENST00000384858 110 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 MIR9-1-201ENST00000385198 89 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
SF3A1Q15459 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.98□□□□□ -1.93
SF3A1Q15459 AC105272.1-201ENST00000438604 198 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AC010409.1-201ENST00000487382 476 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 MTCO2P24-201ENST00000515611 426 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 RNU6-496P-201ENST00000516145 99 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.98□□□□□ -1.93
SF3A1Q15459 AC004486.1-201ENST00000546846 233 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AC078899.2-201ENST00000595282 212 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AC006435.5-201ENST00000624486 112 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AC080100.1-201ENST00000624239 5356 ntBASIC2.98□□□□□ -1.93
SF3A1Q15459 AL136360.1-201ENST00000503377 1900 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
SF3A1Q15459 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
SF3A1Q15459 Y_RNA.287-201ENST00000364853 94 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 Y_RNA.329-201ENST00000365209 107 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 Y_RNA.461-201ENST00000384263 103 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 RNA5SP323-201ENST00000391094 133 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 MIR873-201ENST00000401120 77 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 RNA5SP450-201ENST00000411206 102 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 MTCYBP9-201ENST00000431021 303 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 HSPE1P25-201ENST00000455484 251 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 SNORA70.12-201ENST00000516084 153 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 RNA5SP282-201ENST00000516355 108 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.97□□□□□ -1.93
SF3A1Q15459 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.97□□□□□ -1.93
SF3A1Q15459 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.97□□□□□ -1.93
SF3A1Q15459 MIR5092-201ENST00000583139 88 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 MIR4438-201ENST00000585271 93 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SF3A1Q15459 AC010615.1-201ENST00000594254 1764 ntBASIC2.97□□□□□ -1.93
SF3A1Q15459 SNORA27.1-201ENST00000362604 124 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms