Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-578P-201ENST00000390980 103 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 AC004866.1-201ENST00000411748 78 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.72□□□□□ -1.97
COL4A3Q01955 SNRPGP5-201ENST00000456003 220 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 AC108729.3-201ENST00000513484 108 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 AC100767.1-201ENST00000528178 123 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 AF127577.6-201ENST00000623352 2191 ntBASIC2.72□□□□□ -1.97
COL4A3Q01955 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.71□□□□□ -1.97
COL4A3Q01955 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.71□□□□□ -1.98
COL4A3Q01955 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
COL4A3Q01955 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A3Q01955 RNU6-1210P-201ENST00000363775 107 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 RNU6-818P-201ENST00000364837 108 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 Y_RNA.287-201ENST00000364853 94 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 Y_RNA.341-201ENST00000365341 102 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 MIR147B-201ENST00000390185 80 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 RNU6-1168P-201ENST00000390831 104 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 RNU6-750P-201ENST00000390946 107 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 SNORA26.5-201ENST00000391215 123 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 AL031003.1-201ENST00000404229 172 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 RNA5SP425-201ENST00000410336 112 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.71□□□□□ -1.98
COL4A3Q01955 RPL23AP70-201ENST00000483361 460 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 AC010409.1-201ENST00000487382 476 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 RNU6-479P-201ENST00000516348 105 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 HSPE1P18-201ENST00000517602 280 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 AC025281.1-201ENST00000567026 265 ntBASIC2.71□□□□□ -1.98
COL4A3Q01955 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A3Q01955 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A3Q01955 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A3Q01955 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A3Q01955 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A3Q01955 Y_RNA.140-201ENST00000363474 103 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU6-103P-201ENST00000363686 107 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU6-275P-201ENST00000364910 107 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 Y_RNA.368-201ENST00000365547 113 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 MIR181A2-201ENST00000384863 110 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 Y_RNA.586-201ENST00000391146 98 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU6-381P-201ENST00000391259 108 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU2-49P-201ENST00000410666 184 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 AL365496.1-201ENST00000426885 215 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A3Q01955 AC112771.1-201ENST00000463581 102 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 AC145146.1-201ENST00000496370 254 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU6-426P-201ENST00000516464 97 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 SNORD116-25-201ENST00000516517 92 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU7-121P-201ENST00000516604 62 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU1-117P-201ENST00000517041 158 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 MIR4648-201ENST00000580107 72 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 MIR4781-201ENST00000585250 76 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
COL4A3Q01955 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
COL4A3Q01955 AC100821.1-201ENST00000523153 2479 ntBASIC2.7□□□□□ -1.98
COL4A3Q01955 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A3Q01955 RNU6-899P-201ENST00000363947 107 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 SNORA67.2-201ENST00000384300 149 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 HMGN2P20-201ENST00000437531 273 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A3Q01955 RPL36AP48-201ENST00000485521 314 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.69□□□□□ -1.98
COL4A3Q01955 RNA5SP272-201ENST00000516095 111 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 RN7SKP164-201ENST00000516138 266 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 RNA5SP76-201ENST00000516277 87 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 RNU6-313P-201ENST00000516317 112 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 MIR4498-201ENST00000577599 66 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 ZNF861P-201ENST00000588126 639 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 U6.115-201ENST00000636045 103 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A3Q01955 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.69□□□□□ -1.98
COL4A3Q01955 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
COL4A3Q01955 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A3Q01955 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
COL4A3Q01955 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A3Q01955 snoU2_19.1-201ENST00000362361 80 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 SNORD115-30-201ENST00000364117 82 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 RNU4-10P-201ENST00000364383 140 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 Y_RNA.456-201ENST00000384232 111 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 Z98742.3-201ENST00000418637 326 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A3Q01955 RPL23AP62-201ENST00000463396 453 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A3Q01955 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.69□□□□□ -1.98
COL4A3Q01955 AP000942.3-201ENST00000603702 160 ntBASIC2.69□□□□□ -1.98
COL4A3Q01955 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A3Q01955 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A3Q01955 AC069528.2-201ENST00000624849 1991 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL4A3Q01955 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC2.68□□□□□ -1.98
COL4A3Q01955 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
COL4A3Q01955 Y_RNA.24-201ENST00000362508 103 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 RNU6-655P-201ENST00000362858 107 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 RNU1-57P-201ENST00000384491 166 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 SNORA22C-201ENST00000384614 134 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 RNU6-257P-201ENST00000410238 98 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 AC009969.1-201ENST00000438726 172 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.68□□□□□ -1.98
COL4A3Q01955 AC096725.1-201ENST00000514266 313 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms