Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR3169-201ENST00000578032 83 ntBASIC2.18□□□□□ -2.06
CTCFP49711 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.18□□□□□ -2.06
CTCFP49711 MIR502-201ENST00000606349 86 ntBASIC2.18□□□□□ -2.06
CTCFP49711 SNORD11B-201ENST00000607707 90 ntBASIC2.18□□□□□ -2.06
CTCFP49711 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
CTCFP49711 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CTCFP49711 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.18□□□□□ -2.06
CTCFP49711 CENPCP1-201ENST00000533085 2578 ntBASIC2.17□□□□□ -2.06
CTCFP49711 RNA5SP160-201ENST00000364866 120 ntBASIC2.17□□□□□ -2.06
CTCFP49711 RNU6-793P-201ENST00000384233 104 ntBASIC2.17□□□□□ -2.06
CTCFP49711 MIR9-3-201ENST00000385084 90 ntBASIC2.17□□□□□ -2.06
CTCFP49711 RNA5SP212-201ENST00000391223 107 ntBASIC2.17□□□□□ -2.06
CTCFP49711 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
CTCFP49711 RNU6-1156P-201ENST00000410365 100 ntBASIC2.17□□□□□ -2.06
CTCFP49711 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CTCFP49711 MRPS18CP6-201ENST00000423587 223 ntBASIC2.17□□□□□ -2.06
CTCFP49711 AC025033.1-201ENST00000463883 194 ntBASIC2.17□□□□□ -2.06
CTCFP49711 AC105758.1-201ENST00000506038 399 ntBASIC2.17□□□□□ -2.06
CTCFP49711 MIR4255-201ENST00000579351 72 ntBASIC2.17□□□□□ -2.06
CTCFP49711 MIR4753-201ENST00000585119 83 ntBASIC2.17□□□□□ -2.06
CTCFP49711 AC087588.2-201ENST00000617667 426 ntBASIC2.17□□□□□ -2.06
CTCFP49711 AC104985.2-201ENST00000620598 500 ntBASIC2.17□□□□□ -2.06
CTCFP49711 ZNF702P-202ENST00000434269 1966 ntBASIC2.17□□□□□ -2.06
CTCFP49711 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.17□□□□□ -2.06
CTCFP49711 MTND5P10-201ENST00000603719 1809 ntBASIC2.17□□□□□ -2.06
CTCFP49711 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CTCFP49711 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.16□□□□□ -2.06
CTCFP49711 RNU6-490P-201ENST00000362985 107 ntBASIC2.16□□□□□ -2.06
CTCFP49711 Y_RNA.358-201ENST00000365491 99 ntBASIC2.16□□□□□ -2.06
CTCFP49711 RNU6-418P-201ENST00000384035 107 ntBASIC2.16□□□□□ -2.06
CTCFP49711 MIR597-201ENST00000384968 97 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.16□□□□□ -2.06
CTCFP49711 MIR2053-201ENST00000459295 91 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC092991.1-201ENST00000477176 376 ntBASIC2.16□□□□□ -2.06
CTCFP49711 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.16□□□□□ -2.06
CTCFP49711 RNU1-117P-201ENST00000517041 158 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC093023.1-201ENST00000547375 507 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AK6P2-201ENST00000549020 471 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.16□□□□□ -2.06
CTCFP49711 AC080078.3-201ENST00000605407 463 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC010999.1-201ENST00000611856 324 ntBASIC2.16□□□□□ -2.06
CTCFP49711 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.16□□□□□ -2.06
CTCFP49711 U1.36-201ENST00000620684 176 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC130454.1-201ENST00000622948 401 ntBASIC2.16□□□□□ -2.06
CTCFP49711 AC068205.3-201ENST00000636385 468 ntBASIC2.16□□□□□ -2.06
CTCFP49711 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.06
CTCFP49711 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-1115P-201ENST00000362490 106 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-23P-201ENST00000363283 107 ntBASIC2.15□□□□□ -2.07
CTCFP49711 Y_RNA.132-201ENST00000363421 102 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-727P-201ENST00000363592 107 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU5F-3P-201ENST00000363767 117 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-1305P-201ENST00000364353 104 ntBASIC2.15□□□□□ -2.07
CTCFP49711 Y_RNA.415-201ENST00000384012 112 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-975P-201ENST00000384296 105 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU6-1001P-201ENST00000411265 100 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AC022028.1-201ENST00000412054 408 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AC096920.1-201ENST00000423991 241 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AL357134.1-201ENST00000445848 426 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RPL23AP6-201ENST00000446637 472 ntBASIC2.15□□□□□ -2.07
CTCFP49711 HMGB3P17-201ENST00000504195 649 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AC067942.3-201ENST00000512025 362 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU1-40P-201ENST00000516816 164 ntBASIC2.15□□□□□ -2.07
CTCFP49711 RNU1-97P-201ENST00000516872 164 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.15□□□□□ -2.07
CTCFP49711 MIR3935-201ENST00000583472 104 ntBASIC2.15□□□□□ -2.07
CTCFP49711 MZT1P2-201ENST00000604387 248 ntBASIC2.15□□□□□ -2.07
CTCFP49711 AL773524.1-201ENST00000614065 229 ntBASIC2.15□□□□□ -2.07
CTCFP49711 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.15□□□□□ -2.07
CTCFP49711 Y_RNA.146-201ENST00000363549 102 ntBASIC2.14□□□□□ -2.07
CTCFP49711 Y_RNA.179-201ENST00000363844 90 ntBASIC2.14□□□□□ -2.07
CTCFP49711 SNORD87-201ENST00000364849 89 ntBASIC2.14□□□□□ -2.07
CTCFP49711 Y_RNA.315-201ENST00000365117 102 ntBASIC2.14□□□□□ -2.07
CTCFP49711 Y_RNA.463-201ENST00000384271 102 ntBASIC2.14□□□□□ -2.07
CTCFP49711 MIR329-1-201ENST00000385028 80 ntBASIC2.14□□□□□ -2.07
CTCFP49711 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
CTCFP49711 RNU11-3P-201ENST00000391111 133 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AC016717.1-201ENST00000448918 286 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.14□□□□□ -2.07
CTCFP49711 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.14□□□□□ -2.07
CTCFP49711 RNU2-34P-201ENST00000516534 121 ntBASIC2.14□□□□□ -2.07
CTCFP49711 RNU6-856P-201ENST00000516959 98 ntBASIC2.14□□□□□ -2.07
CTCFP49711 RNU6-699P-201ENST00000517081 110 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.14□□□□□ -2.07
CTCFP49711 MIR5089-201ENST00000580047 84 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.14□□□□□ -2.07
CTCFP49711 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.14□□□□□ -2.07
CTCFP49711 AL133255.1-201ENST00000606374 441 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AC022513.1-201ENST00000624512 117 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AL078596.1-201ENST00000624856 447 ntBASIC2.14□□□□□ -2.07
CTCFP49711 AC073544.1-201ENST00000600110 1595 ntBASIC2.14□□□□□ -2.07
CTCFP49711 Y_RNA.30-201ENST00000362572 97 ntBASIC2.13□□□□□ -2.07
CTCFP49711 RNA5SP361-201ENST00000362686 118 ntBASIC2.13□□□□□ -2.07
CTCFP49711 Y_RNA.579-201ENST00000390939 94 ntBASIC2.13□□□□□ -2.07
CTCFP49711 AC114982.1-201ENST00000469402 321 ntBASIC2.13□□□□□ -2.07
CTCFP49711 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.13□□□□□ -2.07
CTCFP49711 Y_RNA.683-201ENST00000516508 93 ntBASIC2.13□□□□□ -2.07
CTCFP49711 RNU7-4P-201ENST00000516961 62 ntBASIC2.13□□□□□ -2.07
CTCFP49711 Y_RNA.61-201ENST00000362835 102 ntBASIC2.12□□□□□ -2.07
CTCFP49711 RNU6-1145P-201ENST00000384246 107 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms