Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC008134.1-201ENST00000420943 193 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 DPH3P2-201ENST00000422618 250 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 RPS27P21-201ENST00000486977 252 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.17□□□□□ -2.06
PTPN9P43378 MIR4448-201ENST00000584360 86 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 PART1_1.1-201ENST00000611761 217 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.17□□□□□ -2.06
PTPN9P43378 MIR219B-201ENST00000637023 88 ntBASIC2.17□□□□□ -2.06
PTPN9P43378 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
PTPN9P43378 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
PTPN9P43378 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
PTPN9P43378 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
PTPN9P43378 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
PTPN9P43378 Y_RNA.153-201ENST00000363615 91 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNU6-1164P-201ENST00000364428 107 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNA5SP37-201ENST00000365420 130 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNU6-418P-201ENST00000384035 107 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 HMGN2P39-201ENST00000398005 273 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AL079342.1-201ENST00000401460 267 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNA5SP475-201ENST00000410568 110 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNU5A-5P-201ENST00000411054 116 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNU6-130P-201ENST00000411112 103 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC139712.2-201ENST00000424302 339 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC005002.2-201ENST00000438228 269 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
PTPN9P43378 SUMO1P2-201ENST00000452524 304 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.16□□□□□ -2.06
PTPN9P43378 MTND5P22-201ENST00000458380 195 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC025033.1-201ENST00000463883 194 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 RNU6-1143P-201ENST00000516125 104 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 IGKV3-31-201ENST00000523109 329 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AL109918.3-201ENST00000603072 338 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC011476.5-201ENST00000615594 130 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 AC130454.1-201ENST00000622948 401 ntBASIC2.16□□□□□ -2.06
PTPN9P43378 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
PTPN9P43378 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
PTPN9P43378 RNU1-58P-201ENST00000362413 163 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 SNORA64-201ENST00000384674 134 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 RNA5SP465-201ENST00000391195 109 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AL023284.1-201ENST00000403956 276 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AC113618.1-201ENST00000416747 285 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 RNU6-1045P-201ENST00000516321 107 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 RNU6-107P-201ENST00000516643 102 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 MIR514B-201ENST00000516774 80 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.15□□□□□ -2.07
PTPN9P43378 AC005176.2-201ENST00000596933 147 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AL360085.1-201ENST00000604713 532 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 RAC1P9-201ENST00000604990 392 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AC116312.1-201ENST00000606841 314 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AL353149.1-201ENST00000610667 244 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AC013412.1-201ENST00000610687 192 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 AC022202.1-201ENST00000613515 211 ntBASIC2.15□□□□□ -2.07
PTPN9P43378 U8.2-201ENST00000363156 134 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 RNU6-626P-201ENST00000363354 107 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 RNU6-20P-201ENST00000384106 107 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 SNORA70B-201ENST00000384210 135 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 Y_RNA.570-201ENST00000384750 101 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 MIR518A2-201ENST00000384966 87 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 SNORA11.2-201ENST00000408318 127 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 RNA5SP338-201ENST00000410495 85 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AL139156.1-201ENST00000412785 841 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.14□□□□□ -2.07
PTPN9P43378 AC016717.1-201ENST00000448918 286 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AL021397.1-201ENST00000451806 248 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 RNU6-327P-201ENST00000516270 127 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 SNORA31.25-201ENST00000517242 134 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AC025647.1-201ENST00000517879 253 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AC131281.1-201ENST00000522984 164 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.14□□□□□ -2.07
PTPN9P43378 AP002001.1-203ENST00000534002 267 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 MIR3169-201ENST00000578032 83 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AC078899.2-201ENST00000595282 212 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 PRR13P7-201ENST00000605538 430 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 AC006435.5-201ENST00000624486 112 ntBASIC2.14□□□□□ -2.07
PTPN9P43378 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
PTPN9P43378 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
PTPN9P43378 SNORD114-7-201ENST00000362520 77 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RNA5SP493-201ENST00000364115 91 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 SNORD114-6-201ENST00000364393 72 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 SNORD23.1-201ENST00000408212 104 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RNU6-57P-201ENST00000411348 103 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RPL23AP7-203ENST00000449021 469 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.13□□□□□ -2.07
PTPN9P43378 AC010655.3-201ENST00000478818 450 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 AC025465.3-201ENST00000510570 311 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RNU7-193P-201ENST00000516723 65 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RNU6-897P-201ENST00000517135 105 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 SUMO2P18-201ENST00000518873 252 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 MIR4529-201ENST00000578110 78 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 AC136443.5-201ENST00000603741 370 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.13□□□□□ -2.07
PTPN9P43378 AC012640.5-201ENST00000623897 319 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 ZNF355P-201ENST00000427301 3216 ntBASIC2.13□□□□□ -2.07
PTPN9P43378 RNA5SP160-201ENST00000364866 120 ntBASIC2.12□□□□□ -2.07
PTPN9P43378 RNU6-1240P-201ENST00000365155 104 ntBASIC2.12□□□□□ -2.07
PTPN9P43378 SNORA67.3-201ENST00000384366 140 ntBASIC2.12□□□□□ -2.07
PTPN9P43378 MIR548F4-201ENST00000408515 105 ntBASIC2.12□□□□□ -2.07
PTPN9P43378 RNU2-54P-201ENST00000410299 190 ntBASIC2.12□□□□□ -2.07
PTPN9P43378 MTND2P23-201ENST00000422990 651 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms