Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SKP43-201ENST00000516173 320 ntBASIC3.59□□□□□ -1.83
MSX1P28360 SCARNA15-202ENST00000516881 127 ntBASIC3.59□□□□□ -1.83
MSX1P28360 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.59□□□□□ -1.83
MSX1P28360 YPEL5P3-201ENST00000547227 352 ntBASIC3.59□□□□□ -1.83
MSX1P28360 MIR5047-201ENST00000579212 100 ntBASIC3.59□□□□□ -1.83
MSX1P28360 AL121772.2-201ENST00000614331 297 ntBASIC3.59□□□□□ -1.83
MSX1P28360 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.59□□□□□ -1.83
MSX1P28360 U7.8-201ENST00000619968 63 ntBASIC3.59□□□□□ -1.83
MSX1P28360 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.59□□□□□ -1.83
MSX1P28360 U6.98-201ENST00000637157 84 ntBASIC3.59□□□□□ -1.83
MSX1P28360 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
MSX1P28360 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.59□□□□□ -1.84
MSX1P28360 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.59□□□□□ -1.84
MSX1P28360 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
MSX1P28360 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
MSX1P28360 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 RNU6-1083P-201ENST00000384022 107 ntBASIC3.58□□□□□ -1.84
MSX1P28360 SNORA57.3-201ENST00000411095 141 ntBASIC3.58□□□□□ -1.84
MSX1P28360 HMGN1P7-201ENST00000491722 313 ntBASIC3.58□□□□□ -1.84
MSX1P28360 AC011406.1-201ENST00000512440 370 ntBASIC3.58□□□□□ -1.84
MSX1P28360 RNA5SP164-201ENST00000516533 110 ntBASIC3.58□□□□□ -1.84
MSX1P28360 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.58□□□□□ -1.84
MSX1P28360 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 TNPO1P3-201ENST00000436471 2662 ntBASIC3.58□□□□□ -1.84
MSX1P28360 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
MSX1P28360 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
MSX1P28360 OTUD4P1-201ENST00000237841 3067 ntBASIC3.58□□□□□ -1.84
MSX1P28360 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSX1P28360 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.57□□□□□ -1.84
MSX1P28360 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX1P28360 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSX1P28360 Y_RNA.198-201ENST00000364013 98 ntBASIC3.57□□□□□ -1.84
MSX1P28360 SNORD77.3-201ENST00000391113 65 ntBASIC3.57□□□□□ -1.84
MSX1P28360 RNA5SP306-201ENST00000411087 107 ntBASIC3.57□□□□□ -1.84
MSX1P28360 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.57□□□□□ -1.84
MSX1P28360 ARF4P2-201ENST00000430209 526 ntBASIC3.57□□□□□ -1.84
MSX1P28360 AC025750.2-201ENST00000442609 450 ntBASIC3.57□□□□□ -1.84
MSX1P28360 AL031183.1-201ENST00000457667 207 ntBASIC3.57□□□□□ -1.84
MSX1P28360 RN7SL330P-201ENST00000469709 307 ntBASIC3.57□□□□□ -1.84
MSX1P28360 MRPS36P2-201ENST00000512569 299 ntBASIC3.57□□□□□ -1.84
MSX1P28360 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
MSX1P28360 SNORA31.1-201ENST00000515993 133 ntBASIC3.57□□□□□ -1.84
MSX1P28360 SNORA31.5-201ENST00000516190 133 ntBASIC3.57□□□□□ -1.84
MSX1P28360 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.57□□□□□ -1.84
MSX1P28360 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.57□□□□□ -1.84
MSX1P28360 AL161756.2-201ENST00000604597 246 ntBASIC3.57□□□□□ -1.84
MSX1P28360 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.57□□□□□ -1.84
MSX1P28360 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
MSX1P28360 RNA5SP119-201ENST00000362715 117 ntBASIC3.56□□□□□ -1.84
MSX1P28360 RNU1-72P-201ENST00000362976 153 ntBASIC3.56□□□□□ -1.84
MSX1P28360 RNY4P6-201ENST00000363667 96 ntBASIC3.56□□□□□ -1.84
MSX1P28360 MIR1253-201ENST00000408273 105 ntBASIC3.56□□□□□ -1.84
MSX1P28360 RNU2-32P-201ENST00000411193 191 ntBASIC3.56□□□□□ -1.84
MSX1P28360 SNRPGP10-201ENST00000432323 225 ntBASIC3.56□□□□□ -1.84
MSX1P28360 AC026726.1-201ENST00000512859 601 ntBASIC3.56□□□□□ -1.84
MSX1P28360 RNU6-693P-201ENST00000516134 107 ntBASIC3.56□□□□□ -1.84
MSX1P28360 Y_RNA.666-201ENST00000516187 112 ntBASIC3.56□□□□□ -1.84
MSX1P28360 CYCSP30-201ENST00000546447 172 ntBASIC3.56□□□□□ -1.84
MSX1P28360 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.56□□□□□ -1.84
MSX1P28360 AC008507.4-201ENST00000585464 127 ntBASIC3.56□□□□□ -1.84
MSX1P28360 AC012314.7-201ENST00000619693 93 ntBASIC3.56□□□□□ -1.84
MSX1P28360 MIR1248-201ENST00000629190 106 ntBASIC3.56□□□□□ -1.84
MSX1P28360 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
MSX1P28360 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSX1P28360 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSX1P28360 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
MSX1P28360 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
MSX1P28360 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.56□□□□□ -1.84
MSX1P28360 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
MSX1P28360 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.56□□□□□ -1.84
MSX1P28360 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
MSX1P28360 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
MSX1P28360 MFSD8-236ENST00000641509 4050 ntBASIC3.55□□□□□ -1.84
MSX1P28360 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSX1P28360 SNORA73.2-201ENST00000364946 201 ntBASIC3.55□□□□□ -1.84
MSX1P28360 MIR488-201ENST00000365739 83 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RNU1-89P-201ENST00000384592 164 ntBASIC3.55□□□□□ -1.84
MSX1P28360 MIR181B1-201ENST00000385240 110 ntBASIC3.55□□□□□ -1.84
MSX1P28360 MIR199A2-201ENST00000385289 110 ntBASIC3.55□□□□□ -1.84
MSX1P28360 AL117342.1-201ENST00000404861 406 ntBASIC3.55□□□□□ -1.84
MSX1P28360 SNORA3.3-201ENST00000408712 125 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RN7SKP156-201ENST00000410308 342 ntBASIC3.55□□□□□ -1.84
MSX1P28360 AC093578.1-201ENST00000415219 368 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RPS26P48-201ENST00000491713 339 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RNU6-965P-201ENST00000516721 96 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RN7SKP282-201ENST00000516824 299 ntBASIC3.55□□□□□ -1.84
MSX1P28360 RNA5SP490-201ENST00000517141 136 ntBASIC3.55□□□□□ -1.84
MSX1P28360 AC026403.1-201ENST00000518938 295 ntBASIC3.55□□□□□ -1.84
MSX1P28360 AP003327.1-201ENST00000529684 127 ntBASIC3.55□□□□□ -1.84
MSX1P28360 MIR3186-201ENST00000577404 85 ntBASIC3.55□□□□□ -1.84
MSX1P28360 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.55□□□□□ -1.84
MSX1P28360 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.55□□□□□ -1.84
MSX1P28360 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.55□□□□□ -1.84
MSX1P28360 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
MSX1P28360 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
MSX1P28360 Y_RNA.242-201ENST00000364473 110 ntBASIC3.54□□□□□ -1.84
MSX1P28360 Y_RNA.362-201ENST00000365518 110 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 620.7 ms