Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC008555.8-201ENST00000623602 2168 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 Y_RNA.27-201ENST00000362540 103 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 RNU6-727P-201ENST00000363592 107 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 RNU6-743P-201ENST00000364151 106 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 RNU6-793P-201ENST00000384233 104 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 RNY3P4-201ENST00000384428 101 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 MIR606-201ENST00000384851 96 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 MIR320B2-201ENST00000408479 138 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 MTCO3P19-201ENST00000415864 321 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AL445685.2-201ENST00000422551 342 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AC009237.7-201ENST00000447357 229 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AC010469.2-201ENST00000496412 480 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXD4P09016 RNU5F-4P-201ENST00000516581 114 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AC040926.1-201ENST00000530195 238 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AC110588.1-201ENST00000559699 137 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AL357075.2-201ENST00000614906 189 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 U6.92-201ENST00000636464 89 ntBASIC1.75□□□□□ -2.13
HOXD4P09016 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HOXD4P09016 Y_RNA.179-201ENST00000363844 90 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 SNORA63C-201ENST00000364578 129 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 SNORD14.1-201ENST00000365609 90 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 Y_RNA.422-201ENST00000384054 114 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 Y_RNA.424-201ENST00000384063 103 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU6-1145P-201ENST00000384246 107 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU6-1160P-201ENST00000384546 104 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU6-823P-201ENST00000391042 103 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNA5SP504-201ENST00000410676 117 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.74□□□□□ -2.13
HOXD4P09016 AL139156.1-201ENST00000412785 841 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.74□□□□□ -2.13
HOXD4P09016 HMGN2P19-201ENST00000425149 265 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 AL137159.1-201ENST00000452808 512 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.74□□□□□ -2.13
HOXD4P09016 RNU7-14P-201ENST00000459331 62 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RPS23P5-201ENST00000495419 428 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 AC093852.1-201ENST00000503587 266 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU6-1053P-201ENST00000515930 101 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 Y_RNA.683-201ENST00000516508 93 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU1-117P-201ENST00000517041 158 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU6-667P-201ENST00000517186 102 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.74□□□□□ -2.13
HOXD4P09016 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.74□□□□□ -2.13
HOXD4P09016 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.74□□□□□ -2.13
HOXD4P09016 AL360085.1-201ENST00000604713 532 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
HOXD4P09016 MTND5P35-201ENST00000557537 1720 ntBASIC1.74□□□□□ -2.13
HOXD4P09016 RNU1-62P-201ENST00000362599 164 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RNU5F-3P-201ENST00000363767 117 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 SNORD87-201ENST00000364849 89 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 Y_RNA.389-201ENST00000383924 113 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RNU6-926P-201ENST00000384075 107 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RNU6-738P-201ENST00000384531 106 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 AL033519.2-201ENST00000403958 392 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 SNORD12B-201ENST00000410433 91 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RPL31P63-201ENST00000422565 375 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.73□□□□□ -2.13
HOXD4P09016 RNU6-1012P-201ENST00000516606 109 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RNU6-344P-201ENST00000516635 111 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RN7SKP49-201ENST00000516675 260 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.73□□□□□ -2.13
HOXD4P09016 AC113195.1-201ENST00000579952 141 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RPS29P30-201ENST00000600975 111 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 AC124312.5-201ENST00000604451 268 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 RPL17P51-201ENST00000605218 238 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 SNORD11B-201ENST00000607707 90 ntBASIC1.73□□□□□ -2.13
HOXD4P09016 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
HOXD4P09016 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.73□□□□□ -2.13
HOXD4P09016 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.73□□□□□ -2.13
HOXD4P09016 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
HOXD4P09016 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXD4P09016 RNU6-545P-201ENST00000362681 104 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 Y_RNA.162-201ENST00000363683 102 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 Y_RNA.415-201ENST00000384012 112 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 Y_RNA.455-201ENST00000384230 98 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 RNU6-611P-201ENST00000384276 104 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 SNORA67.2-201ENST00000384300 149 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 MIR29C-201ENST00000385231 88 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 SNORD78.2-201ENST00000391076 69 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AL512604.1-201ENST00000404812 257 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 RNU6-985P-201ENST00000410182 104 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 RNU6-101P-201ENST00000410323 104 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 MTND2P23-201ENST00000422990 651 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AC108667.1-201ENST00000428618 249 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AC007395.1-201ENST00000451333 677 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXD4P09016 RNU6-764P-201ENST00000516396 105 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 RNA5SP490-201ENST00000517141 136 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 Y_RNA.721-201ENST00000517207 102 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AC022616.4-201ENST00000522985 181 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXD4P09016 RRN3P3-201ENST00000549207 578 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 MIR5089-201ENST00000580047 84 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.72□□□□□ -2.13
HOXD4P09016 AL390123.1-201ENST00000603216 237 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AL627230.6-201ENST00000611129 280 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 AC011476.5-201ENST00000615594 130 ntBASIC1.72□□□□□ -2.13
HOXD4P09016 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
HOXD4P09016 Y_RNA.153-201ENST00000363615 91 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms