Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 Y_RNA.327-201ENST00000365201 102 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 RNU6-53P-201ENST00000365367 106 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 SNORD116-11-201ENST00000383882 92 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 Y_RNA.414-201ENST00000384011 101 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 MIR10B-201ENST00000385011 110 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC243428.1-201ENST00000421099 264 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.79□□□□□ -2.28
MT-ND4P03905 RAB28P5-201ENST00000427490 651 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.79□□□□□ -2.28
MT-ND4P03905 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.79□□□□□ -2.28
MT-ND4P03905 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.79□□□□□ -2.28
MT-ND4P03905 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.79□□□□□ -2.28
MT-ND4P03905 AC093303.1-201ENST00000514549 295 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.79□□□□□ -2.28
MT-ND4P03905 AC091144.1-201ENST00000519573 138 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC023157.2-201ENST00000540596 141 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 MIR4778-201ENST00000577635 80 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 MIR3942-201ENST00000585264 109 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 MIR4438-201ENST00000585271 93 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC013244.2-201ENST00000603396 103 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC080078.3-201ENST00000605407 463 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC073349.3-201ENST00000617616 186 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 AC018630.2-201ENST00000534866 2403 ntBASIC0.79□□□□□ -2.28
MT-ND4P03905 Y_RNA.41-201ENST00000362646 102 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 SNORD116-2-201ENST00000384274 95 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 Y_RNA.533-201ENST00000384596 114 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 SNORD116-6-201ENST00000384711 96 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 MIR660-201ENST00000385235 97 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 MRPS10P1-201ENST00000448483 130 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AC134698.4-201ENST00000523451 826 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.78□□□□□ -2.28
MT-ND4P03905 APOOP3-201ENST00000536787 586 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AL513534.2-201ENST00000603836 250 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AF250324.2-201ENST00000608299 610 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AC103591.3-201ENST00000608684 209 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AC091895.1-201ENST00000624494 256 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.78□□□□□ -2.28
MT-ND4P03905 AC024614.3-201ENST00000637860 256 ntBASIC0.78□□□□□ -2.28
MT-ND4P03905 RNU4-76P-201ENST00000364509 141 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.405-201ENST00000383979 100 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.451-201ENST00000384200 100 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.524-201ENST00000384564 100 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.559-201ENST00000384686 107 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.561-201ENST00000384694 100 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 MIR222-201ENST00000384992 110 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 FGF7P8-201ENST00000402994 292 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 STAG3L5P-204ENST00000443759 179 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 HSPE1P13-201ENST00000451143 297 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 RNU7-94P-201ENST00000459576 63 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 AC048334.1-201ENST00000477975 159 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 RPS27P22-201ENST00000478056 241 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 AL163540.1-201ENST00000485382 386 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 AC010469.2-201ENST00000496412 480 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 SNORA31.2-201ENST00000516019 134 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 SNORA70.22-201ENST00000517160 124 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 MTND2P38-201ENST00000522536 667 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.77□□□□□ -2.29
MT-ND4P03905 AL162424.1-201ENST00000602325 221 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 AL133216.2-202ENST00000634512 349 ntBASIC0.77□□□□□ -2.29
MT-ND4P03905 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
MT-ND4P03905 Y_RNA.184-201ENST00000363884 108 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 SNORD41-201ENST00000386967 70 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 RNU6-910P-201ENST00000390844 107 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 POLR2J4-204ENST00000418424 324 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.76□□□□□ -2.29
MT-ND4P03905 COX6CP14-201ENST00000469580 174 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 RNU7-175P-201ENST00000515915 61 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 RN7SKP49-201ENST00000516675 260 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.76□□□□□ -2.29
MT-ND4P03905 MIR4661-201ENST00000582720 75 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 7SK.7-201ENST00000603504 247 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 AC080078.2-201ENST00000603766 501 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 snoU13.31-201ENST00000607291 104 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 GHRLOS.1-201ENST00000610995 70 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 AC010999.1-201ENST00000611856 324 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 AC090617.10-201ENST00000624308 134 ntBASIC0.76□□□□□ -2.29
MT-ND4P03905 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.76□□□□□ -2.29
MT-ND4P03905 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
MT-ND4P03905 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.75□□□□□ -2.29
MT-ND4P03905 RNU5F-3P-201ENST00000363767 117 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 MIR653-201ENST00000385279 96 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.75□□□□□ -2.29
MT-ND4P03905 MTND3P23-201ENST00000431980 347 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AC092473.1-201ENST00000441098 221 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 MTCO2P7-201ENST00000446518 666 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.75□□□□□ -2.29
MT-ND4P03905 AC105758.1-201ENST00000506038 399 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AC010598.1-201ENST00000510378 103 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.75□□□□□ -2.29
MT-ND4P03905 RNA5SP458-201ENST00000516188 119 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 SCARNA16.2-201ENST00000516520 172 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 RNU6-506P-201ENST00000516553 94 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 RNU6-314P-201ENST00000516574 104 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 RNA5SP168-201ENST00000516642 112 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 RNU6-107P-201ENST00000516643 102 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 RNU6-273P-201ENST00000516937 96 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 AL590705.4-201ENST00000532209 134 ntBASIC0.75□□□□□ -2.29
MT-ND4P03905 MIR4273-201ENST00000582824 84 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms