Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.22□□□□□ -2.05
LDB2O43679 RNU6-496P-201ENST00000516145 99 ntBASIC2.22□□□□□ -2.05
LDB2O43679 RNU6-107P-201ENST00000516643 102 ntBASIC2.22□□□□□ -2.05
LDB2O43679 RNU7-110P-201ENST00000516891 62 ntBASIC2.22□□□□□ -2.05
LDB2O43679 RNU6-570P-201ENST00000517051 105 ntBASIC2.22□□□□□ -2.05
LDB2O43679 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.22□□□□□ -2.05
LDB2O43679 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.22□□□□□ -2.05
LDB2O43679 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.22□□□□□ -2.05
LDB2O43679 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.22□□□□□ -2.05
LDB2O43679 SNORD113-5-201ENST00000607261 78 ntBASIC2.22□□□□□ -2.05
LDB2O43679 MIR6873-201ENST00000622788 63 ntBASIC2.22□□□□□ -2.05
LDB2O43679 MIR1248-201ENST00000629190 106 ntBASIC2.22□□□□□ -2.05
LDB2O43679 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.22□□□□□ -2.05
LDB2O43679 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
LDB2O43679 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.22□□□□□ -2.05
LDB2O43679 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.05
LDB2O43679 ZNF720P1-201ENST00000562403 1939 ntBASIC2.21□□□□□ -2.06
LDB2O43679 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.21□□□□□ -2.06
LDB2O43679 RNU6-545P-201ENST00000362681 104 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RNU4-90P-201ENST00000362773 141 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RNU6-1175P-201ENST00000365200 107 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RNU6-21P-201ENST00000384710 107 ntBASIC2.21□□□□□ -2.06
LDB2O43679 AL357139.1-201ENST00000407792 426 ntBASIC2.21□□□□□ -2.06
LDB2O43679 Y_RNA.602-201ENST00000410535 92 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RNA5SP475-201ENST00000410568 110 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RNU6-1203P-201ENST00000410703 110 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RN7SKP192-201ENST00000411291 327 ntBASIC2.21□□□□□ -2.06
LDB2O43679 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.21□□□□□ -2.06
LDB2O43679 AC104435.1-201ENST00000483483 166 ntBASIC2.21□□□□□ -2.06
LDB2O43679 RPS29P21-201ENST00000496272 170 ntBASIC2.21□□□□□ -2.06
LDB2O43679 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.21□□□□□ -2.06
LDB2O43679 AP002001.1-203ENST00000534002 267 ntBASIC2.21□□□□□ -2.06
LDB2O43679 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.21□□□□□ -2.06
LDB2O43679 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.21□□□□□ -2.06
LDB2O43679 AC055872.1-201ENST00000570978 278 ntBASIC2.21□□□□□ -2.06
LDB2O43679 MIR4753-201ENST00000585119 83 ntBASIC2.21□□□□□ -2.06
LDB2O43679 AL109918.3-201ENST00000603072 338 ntBASIC2.21□□□□□ -2.06
LDB2O43679 AC062037.2-201ENST00000610137 73 ntBASIC2.21□□□□□ -2.06
LDB2O43679 U4atac.1-201ENST00000618345 95 ntBASIC2.21□□□□□ -2.06
LDB2O43679 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
LDB2O43679 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
LDB2O43679 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LDB2O43679 RNU1-52P-201ENST00000384190 164 ntBASIC2.2□□□□□ -2.06
LDB2O43679 RNU4-30P-201ENST00000410245 143 ntBASIC2.2□□□□□ -2.06
LDB2O43679 RN7SKP223-201ENST00000410582 62 ntBASIC2.2□□□□□ -2.06
LDB2O43679 RNU2-48P-201ENST00000410694 191 ntBASIC2.2□□□□□ -2.06
LDB2O43679 RPL23AP36-201ENST00000413895 458 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AL356320.1-201ENST00000429616 163 ntBASIC2.2□□□□□ -2.06
LDB2O43679 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.2□□□□□ -2.06
LDB2O43679 AC074290.1-201ENST00000448883 135 ntBASIC2.2□□□□□ -2.06
LDB2O43679 HSPE1P25-201ENST00000455484 251 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC016925.1-201ENST00000458303 298 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC114982.1-201ENST00000469402 321 ntBASIC2.2□□□□□ -2.06
LDB2O43679 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.2□□□□□ -2.06
LDB2O43679 RNA5SP200-201ENST00000516360 103 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC023157.2-201ENST00000540596 141 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC022441.3-201ENST00000605737 136 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC004467.1-201ENST00000615678 330 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC091932.3-201ENST00000624223 323 ntBASIC2.2□□□□□ -2.06
LDB2O43679 AC005336.3-201ENST00000623833 2679 ntBASIC2.2□□□□□ -2.06
LDB2O43679 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.19□□□□□ -2.06
LDB2O43679 RNU6-290P-201ENST00000365212 101 ntBASIC2.19□□□□□ -2.06
LDB2O43679 RNU6-102P-201ENST00000384485 104 ntBASIC2.19□□□□□ -2.06
LDB2O43679 Y_RNA.541-201ENST00000384640 113 ntBASIC2.19□□□□□ -2.06
LDB2O43679 MIR524-201ENST00000385242 87 ntBASIC2.19□□□□□ -2.06
LDB2O43679 MIR548B-201ENST00000385247 97 ntBASIC2.19□□□□□ -2.06
LDB2O43679 MT-TG-201ENST00000387429 68 ntBASIC2.19□□□□□ -2.06
LDB2O43679 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
LDB2O43679 HMGN2P18-201ENST00000450680 270 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AC005042.3-201ENST00000453230 174 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AL139109.1-201ENST00000455491 297 ntBASIC2.19□□□□□ -2.06
LDB2O43679 SNORD127-201ENST00000458892 86 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AC018868.1-201ENST00000491307 315 ntBASIC2.19□□□□□ -2.06
LDB2O43679 SNORA31.11-201ENST00000516528 139 ntBASIC2.19□□□□□ -2.06
LDB2O43679 RNA5SP490-201ENST00000517141 136 ntBASIC2.19□□□□□ -2.06
LDB2O43679 MIR4648-201ENST00000580107 72 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AC006006.1-201ENST00000603082 144 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AP001282.2-201ENST00000616149 309 ntBASIC2.19□□□□□ -2.06
LDB2O43679 AC127459.3-201ENST00000624328 466 ntBASIC2.19□□□□□ -2.06
LDB2O43679 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LDB2O43679 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LDB2O43679 AC010615.1-201ENST00000594254 1764 ntBASIC2.18□□□□□ -2.06
LDB2O43679 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LDB2O43679 Y_RNA.101-201ENST00000363154 102 ntBASIC2.18□□□□□ -2.06
LDB2O43679 Y_RNA.331-201ENST00000365267 102 ntBASIC2.18□□□□□ -2.06
LDB2O43679 SNORA25B-201ENST00000365507 128 ntBASIC2.18□□□□□ -2.06
LDB2O43679 RNU6-438P-201ENST00000365561 103 ntBASIC2.18□□□□□ -2.06
LDB2O43679 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LDB2O43679 RNU2-54P-201ENST00000410299 190 ntBASIC2.18□□□□□ -2.06
LDB2O43679 RNU6-1132P-201ENST00000459214 107 ntBASIC2.18□□□□□ -2.06
LDB2O43679 snoU13.26-201ENST00000459452 105 ntBASIC2.18□□□□□ -2.06
LDB2O43679 HMGB3P3-201ENST00000510526 400 ntBASIC2.18□□□□□ -2.06
LDB2O43679 AC107222.1-201ENST00000510899 637 ntBASIC2.18□□□□□ -2.06
LDB2O43679 RNA5SP82-201ENST00000516707 92 ntBASIC2.18□□□□□ -2.06
LDB2O43679 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.18□□□□□ -2.06
LDB2O43679 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.18□□□□□ -2.06
LDB2O43679 MIR5002-201ENST00000584713 97 ntBASIC2.18□□□□□ -2.06
LDB2O43679 AL590240.4-201ENST00000616908 390 ntBASIC2.18□□□□□ -2.06
LDB2O43679 AC006001.4-201ENST00000622243 395 ntBASIC2.18□□□□□ -2.06
LDB2O43679 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms