Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SNORA75.4-201ENST00000391278 119 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AL117342.1-201ENST00000404861 406 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU2-7P-201ENST00000410794 178 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU4-14P-201ENST00000410858 122 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 MTND3P23-201ENST00000431980 347 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AL445305.1-201ENST00000432577 575 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AC098614.3-201ENST00000438957 440 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 snoU13.9-201ENST00000458927 103 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AC011406.1-201ENST00000512440 370 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-1041P-201ENST00000516254 102 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-1146P-201ENST00000516282 102 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNA5SP384-201ENST00000516615 116 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 SNORA31.17-201ENST00000516953 127 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU1-117P-201ENST00000517041 158 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR3122-201ENST00000577243 73 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR4303-201ENST00000581299 66 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AC005899.2-201ENST00000584353 90 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 PISRT1.1-201ENST00000616930 107 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AC068205.3-201ENST00000636385 468 ntBASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.69□□□□□ -2.14
PCDHGA1Q9Y5H4 AC010615.1-201ENST00000594254 1764 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR126-201ENST00000362291 85 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-862P-201ENST00000362804 105 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-338P-201ENST00000383888 105 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-331P-201ENST00000384724 107 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR518E-201ENST00000385252 88 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU1-139P-201ENST00000391307 165 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AC010409.1-201ENST00000487382 476 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AC105029.1-201ENST00000520250 669 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AC016925.2-201ENST00000605108 242 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AL353149.1-201ENST00000610667 244 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 AL355073.2-201ENST00000612106 557 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.68□□□□□ -2.14
PCDHGA1Q9Y5H4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNY1P16-201ENST00000363063 111 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.106-201ENST00000363189 100 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.355-201ENST00000365462 98 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-281P-201ENST00000384212 103 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-793P-201ENST00000384233 104 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR515-2-201ENST00000384883 83 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR515-1-201ENST00000384884 83 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR548B-201ENST00000385247 97 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-700P-201ENST00000391043 107 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR190B-201ENST00000401119 79 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MTCYBP10-201ENST00000424905 650 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 NDUFB4P10-201ENST00000452541 359 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.635-201ENST00000459041 101 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU7-95P-201ENST00000459222 64 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 AC091179.3-201ENST00000474761 144 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-1114P-201ENST00000516022 107 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR4422-201ENST00000581938 83 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 snoZ196.1-201ENST00000625269 89 ntBASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR424-201ENST00000362227 98 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.118-201ENST00000363300 101 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 Y_RNA.179-201ENST00000363844 90 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU1-96P-201ENST00000364163 162 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 SNORA16.1-201ENST00000364597 132 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 SNORA72.2-201ENST00000365028 127 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR1267-201ENST00000408723 78 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-57P-201ENST00000411348 103 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 CST2P1-201ENST00000425770 87 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 USP9YP16-201ENST00000430287 407 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 USP9YP23-201ENST00000455085 407 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 MTND4P17-201ENST00000470444 350 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 AC093303.1-201ENST00000514549 295 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 RNU6-307P-201ENST00000516743 106 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 AK6P2-201ENST00000549020 471 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 AC010999.1-201ENST00000611856 324 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 MIR338-201ENST00000636369 67 ntBASIC1.66□□□□□ -2.14
PCDHGA1Q9Y5H4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU6-222P-201ENST00000362438 107 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 SNORD33-201ENST00000362761 85 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 Y_RNA.116-201ENST00000363292 103 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 U3.8-201ENST00000363675 217 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 SNORD87-201ENST00000364849 89 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 Y_RNA.364-201ENST00000365532 101 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU6-296P-201ENST00000384608 107 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU1-78P-201ENST00000391248 165 ntBASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.65□□□□□ -2.15
PCDHGA1Q9Y5H4 RNU6-221P-201ENST00000459541 99 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms