Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.07□□□□□ -1.76
COL17A1Q9UMD9 AP001318.4-201ENST00000616637 121 ntBASIC4.07□□□□□ -1.76
COL17A1Q9UMD9 AC024581.2-201ENST00000619986 252 ntBASIC4.07□□□□□ -1.76
COL17A1Q9UMD9 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.07□□□□□ -1.76
COL17A1Q9UMD9 RNU4-10P-201ENST00000364383 140 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.584-201ENST00000391090 114 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL135786.1-201ENST00000415892 214 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 HMGN2P30-201ENST00000423237 256 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AC092047.1-201ENST00000424997 240 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 U8.19-201ENST00000459095 133 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 RPL23AP14-201ENST00000468281 468 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 SNORA43.2-201ENST00000516652 128 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 RN7SKP49-201ENST00000516675 260 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL391261.3-201ENST00000557194 520 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AC009163.5-201ENST00000575421 637 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL356157.2-201ENST00000605122 111 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL121890.5-201ENST00000620848 304 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AC092628.2-201ENST00000622492 339 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 AL136164.4-201ENST00000625013 2135 ntBASIC4.06□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.118-201ENST00000363300 101 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.219-201ENST00000364232 113 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR29B2-201ENST00000385055 81 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 HMGN2P21-201ENST00000447764 270 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC005042.3-201ENST00000453230 174 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RNU6-453P-201ENST00000516819 85 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC022441.3-201ENST00000605737 136 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR7153-201ENST00000637758 57 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 SNORD115-32-201ENST00000364079 82 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.572-201ENST00000384757 98 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR32-201ENST00000384965 70 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR153-2-201ENST00000385225 87 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RPL21P3-201ENST00000395517 478 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RNU6-554P-201ENST00000410466 106 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RPL26P27-201ENST00000414397 437 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AL159169.1-201ENST00000421119 127 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AL356320.1-201ENST00000429616 163 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AL445687.1-201ENST00000439946 251 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC146507.2-201ENST00000460608 476 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RPL36AP21-201ENST00000490372 323 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 SCARNA8-201ENST00000515924 131 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RNU6-703P-201ENST00000516946 107 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RNU6-1183P-201ENST00000517054 60 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR1273D-201ENST00000577266 86 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 MIR3646-201ENST00000578301 84 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.757-201ENST00000578934 114 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 AC005296.1-201ENST00000616145 209 ntBASIC4.05□□□□□ -1.76
COL17A1Q9UMD9 RNA5SP189-201ENST00000364920 115 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 RNU6-880P-201ENST00000384526 107 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 RNU6-541P-201ENST00000384709 110 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 MIR27B-201ENST00000385129 97 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 MIR607-201ENST00000385241 96 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 RNU6-972P-201ENST00000391208 107 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 RNU1-139P-201ENST00000391307 165 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 AC012308.1-201ENST00000451232 178 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 RPL23AP75-201ENST00000491601 451 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 AC078918.1-201ENST00000498515 228 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 SCARNA17.1-201ENST00000516211 143 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 SCARNA17.2-201ENST00000516334 143 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 HSPE1P4-201ENST00000550617 308 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 SCARNA17.4-201ENST00000614296 143 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 AC099654.7-201ENST00000635788 2127 ntBASIC4.04□□□□□ -1.76
COL17A1Q9UMD9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 MIR488-201ENST00000365739 83 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 RNU6-1286P-201ENST00000383871 107 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 Y_RNA.508-201ENST00000384502 114 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 RNU6-1152P-201ENST00000384576 107 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 MIR325-201ENST00000385260 98 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 RNA5SP274-201ENST00000410484 108 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 EDDM3CP-201ENST00000415977 425 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AL158147.1-201ENST00000443970 75 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AC096638.1-201ENST00000444678 216 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AL121914.1-201ENST00000450188 156 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 RNU6-1114P-201ENST00000516022 107 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 RNU6-1007P-201ENST00000516586 107 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 AC015720.1-201ENST00000565251 277 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 DEFB117-201ENST00000602356 141 ntBASIC4.03□□□□□ -1.76
COL17A1Q9UMD9 FTX_3.1-201ENST00000610451 147 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms