Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.339-201ENST00000365325 102 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.415-201ENST00000384012 112 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU6-767P-201ENST00000384132 107 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU6-601P-201ENST00000384540 107 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU6-417P-201ENST00000384712 107 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 MIR548B-201ENST00000385247 97 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RPS20P15-201ENST00000412792 311 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.45□□□□□ -2.18
LHX3Q9UBR4 MTND1P2-201ENST00000430604 821 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 MTND3P23-201ENST00000431980 347 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.45□□□□□ -2.18
LHX3Q9UBR4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.45□□□□□ -2.18
LHX3Q9UBR4 NDUFB4P10-201ENST00000452541 359 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RNU7-95P-201ENST00000459222 64 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 AC091179.3-201ENST00000474761 144 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 RPL7P42-201ENST00000481005 679 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.45□□□□□ -2.18
LHX3Q9UBR4 DNAJC19P9-201ENST00000555084 351 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 AC005668.1-201ENST00000571142 476 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 SNORA77B-201ENST00000578179 125 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 MIR5695-201ENST00000579717 85 ntBASIC1.45□□□□□ -2.18
LHX3Q9UBR4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
LHX3Q9UBR4 U3.8-201ENST00000363675 217 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.184-201ENST00000363884 108 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 RNU4-42P-201ENST00000364738 142 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.287-201ENST00000364853 94 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 MIR10B-201ENST00000385011 110 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 RPL37P10-201ENST00000412884 288 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 AL353997.1-201ENST00000432936 108 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 AC073910.1-201ENST00000445047 438 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.44□□□□□ -2.18
LHX3Q9UBR4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.44□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.706-201ENST00000516933 99 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.44□□□□□ -2.18
LHX3Q9UBR4 MZT1P2-201ENST00000604387 248 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 AC009229.3-201ENST00000608056 282 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.44□□□□□ -2.18
LHX3Q9UBR4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
LHX3Q9UBR4 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.43□□□□□ -2.18
LHX3Q9UBR4 U8.1-201ENST00000362843 134 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.88-201ENST00000363029 99 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.106-201ENST00000363189 100 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.179-201ENST00000363844 90 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
LHX3Q9UBR4 RNU6-793P-201ENST00000384233 104 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 RNU6-331P-201ENST00000384724 107 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 MT-TL1-201ENST00000386347 75 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC016909.1-201ENST00000415916 166 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AP1B1P2-201ENST00000416196 106 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 HSPE1P24-201ENST00000450782 238 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 MTND3P10-201ENST00000450967 341 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC103851.1-201ENST00000506833 274 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.708-201ENST00000516950 96 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC024995.1-201ENST00000523014 93 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AK6P2-201ENST00000549020 471 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AL161670.1-201ENST00000554348 137 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 MIR4422-201ENST00000581938 83 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC100812.1-201ENST00000607622 580 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC005014.2-201ENST00000607795 599 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AL512598.1-201ENST00000610158 273 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.43□□□□□ -2.18
LHX3Q9UBR4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
LHX3Q9UBR4 AC100821.1-201ENST00000523153 2479 ntBASIC1.43□□□□□ -2.18
LHX3Q9UBR4 ZNF209P-201ENST00000593450 2304 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 MIR378A-201ENST00000362177 66 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.67-201ENST00000362870 100 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 RNU6-593P-201ENST00000364716 112 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 RNA5SP323-201ENST00000391094 133 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 RNA5SP467-201ENST00000391274 118 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 MIR1185-2-201ENST00000408687 86 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 USP9YP16-201ENST00000430287 407 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 USP9YP23-201ENST00000455085 407 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.42□□□□□ -2.18
LHX3Q9UBR4 snoU13.27-201ENST00000459278 104 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 RNU7-87P-201ENST00000459343 62 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 MTND4P17-201ENST00000470444 350 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.42□□□□□ -2.18
LHX3Q9UBR4 AC046134.1-201ENST00000514454 666 ntBASIC1.42□□□□□ -2.18
LHX3Q9UBR4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.42□□□□□ -2.18
LHX3Q9UBR4 MTND5P16-201ENST00000460269 1703 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 RNU6-845P-201ENST00000362578 103 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.279-201ENST00000364763 95 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.404-201ENST00000383978 102 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 Y_RNA.482-201ENST00000384377 111 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 RNU1-78P-201ENST00000391248 165 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 COX6CP10-201ENST00000416832 224 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 SNRPGP13-201ENST00000442212 177 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 AC093303.1-201ENST00000514549 295 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 RNA5SP61-201ENST00000516453 100 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.41□□□□□ -2.18
LHX3Q9UBR4 AC010999.1-201ENST00000611856 324 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
LHX3Q9UBR4 ICE2P2-201ENST00000483823 2787 ntBASIC1.41□□□□□ -2.18
LHX3Q9UBR4 RNY1P16-201ENST00000363063 111 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 RNU6-271P-201ENST00000363858 105 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 RNU6-281P-201ENST00000384212 103 ntBASIC1.4□□□□□ -2.19
LHX3Q9UBR4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LHX3Q9UBR4 PDCL2P1-201ENST00000419302 352 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms