Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Y_RNA.433-201ENST00000384089 102 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 SNORA36A-201ENST00000384221 132 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU6-45P-201ENST00000384471 107 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU6-636P-201ENST00000384598 107 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 MIR329-2-201ENST00000385029 84 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 RNU6-903P-201ENST00000391270 109 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AL392103.1-201ENST00000447000 198 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 UBE2V1P12-201ENST00000503954 474 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC091874.1-201ENST00000511402 339 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 MTND1P35-201ENST00000526739 508 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC027288.2-201ENST00000553028 243 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 SUB1P2-201ENST00000556401 297 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 MIR3941-201ENST00000582572 103 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AL117336.2-201ENST00000602435 335 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 AC006566.1-201ENST00000608943 513 ntBASIC0.16□□□□□ -2.38
SCN3AQ9NY46 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.16□□□□□ -2.38
SCN3AQ9NY46 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.15□□□□□ -2.38
SCN3AQ9NY46 SNORA36.2-201ENST00000384004 127 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 MIR32-201ENST00000384965 70 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 RNU6-1093P-201ENST00000391194 107 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.15□□□□□ -2.39
SCN3AQ9NY46 OR9P1P-201ENST00000496431 281 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.15□□□□□ -2.39
SCN3AQ9NY46 RNU6-1278P-201ENST00000516130 107 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 AC018645.2-201ENST00000609151 472 ntBASIC0.15□□□□□ -2.39
SCN3AQ9NY46 AC090625.1-201ENST00000357130 210 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR103A1-201ENST00000362165 78 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-500P-201ENST00000362349 107 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-181P-201ENST00000363225 107 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-660P-201ENST00000364566 109 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-157P-201ENST00000383957 107 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-784P-201ENST00000384330 106 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 SNORA2B-201ENST00000384583 137 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR140-201ENST00000385282 100 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR1912-201ENST00000410389 80 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MTND4P18-201ENST00000447010 465 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC007215.1-201ENST00000464893 276 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-445P-201ENST00000516949 107 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC104576.1-201ENST00000524225 88 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MTCO3P23-201ENST00000561363 289 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-715P-201ENST00000365204 103 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNA5SP482-201ENST00000391269 118 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR320B2-201ENST00000408479 138 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RPEP5-201ENST00000441137 268 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 PCNPP5-201ENST00000452246 481 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.14□□□□□ -2.39
SCN3AQ9NY46 SNORA14.1-201ENST00000516113 141 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-1198P-201ENST00000516904 67 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC026470.2-201ENST00000561492 181 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR4703-201ENST00000577728 79 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC245014.2-201ENST00000603689 287 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC104695.3-201ENST00000604052 296 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC246785.4-201ENST00000605374 287 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC092354.1-201ENST00000606057 376 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 SNORA28-201ENST00000606769 126 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AL391834.2-201ENST00000609982 546 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 AC006504.8-201ENST00000621046 635 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR4315-1-201ENST00000636800 73 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 MIR4315-2-201ENST00000640925 73 ntBASIC0.14□□□□□ -2.39
SCN3AQ9NY46 RNU6-82P-201ENST00000363970 107 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 SNORD113.3-201ENST00000364630 78 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 Y_RNA.265-201ENST00000364677 108 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 RNU6-533P-201ENST00000384144 107 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 SNORD105-201ENST00000386910 85 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 SNORA40.4-201ENST00000390971 128 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AC016909.1-201ENST00000415916 166 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MTCYBP10-201ENST00000424905 650 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AC002429.1-201ENST00000437672 148 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AC093850.1-201ENST00000454121 251 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MTCO3P38-201ENST00000468910 766 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 RNU7-99P-201ENST00000516271 62 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL157687.1-201ENST00000554853 619 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MIR5589-201ENST00000579442 60 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AP002371.2-201ENST00000624450 503 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 RNU6-349P-201ENST00000362402 107 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 Y_RNA.60-201ENST00000362831 98 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MIR526A1-201ENST00000384897 85 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 RNU2-29P-201ENST00000410423 189 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 RPS3AP3-201ENST00000411933 242 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 Z99497.1-201ENST00000421282 135 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MTCO2P34-201ENST00000421994 607 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MTCO2P12-201ENST00000427426 682 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 MTCO1P19-201ENST00000443487 500 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 AL033528.1-201ENST00000453780 140 ntBASIC0.13□□□□□ -2.39
SCN3AQ9NY46 TPT1P7-201ENST00000458300 517 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms