Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR7153-201ENST00000637758 57 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 Z82209.1-201ENST00000422141 2135 ntBASIC3.79□□□□□ -1.8
CCDC87Q9NVE4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AC009487.4-201ENST00000624969 3585 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.357-201ENST00000365487 109 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 Y_RNA.398-201ENST00000383952 99 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 RNU6-1027P-201ENST00000383998 107 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AL135790.2-201ENST00000437701 267 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 RPS12P18-201ENST00000442381 270 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 RNU7-14P-201ENST00000459331 62 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AL049830.2-201ENST00000480072 201 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 MRPS36P2-201ENST00000512569 299 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 SCARNA17.1-201ENST00000516211 143 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 SCARNA17.2-201ENST00000516334 143 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 MIR4425-201ENST00000580572 84 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 SCARNA17.4-201ENST00000614296 143 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AC007318.2-201ENST00000620999 243 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 AC073476.4-201ENST00000628409 72 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 MIR7157-201ENST00000635801 60 ntBASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
CCDC87Q9NVE4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.78□□□□□ -1.81
CCDC87Q9NVE4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.78□□□□□ -1.81
CCDC87Q9NVE4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.182-201ENST00000363880 111 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.310-201ENST00000365063 113 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RNA5SP240-201ENST00000365355 128 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 CD24P4-201ENST00000382840 243 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 SNORA8.3-201ENST00000384679 139 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RNU6-381P-201ENST00000391259 108 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 ARF4P2-201ENST00000430209 526 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 AC087499.2-201ENST00000432861 149 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 AC146507.2-201ENST00000460608 476 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RAC1P5-201ENST00000512182 576 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RNU6-237P-201ENST00000515985 71 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 MTND5P41-201ENST00000517498 206 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 AC018630.3-201ENST00000542637 96 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 AC107294.3-201ENST00000609211 526 ntBASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC87Q9NVE4 RNU6-234P-201ENST00000365229 104 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.412-201ENST00000384001 104 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 MIR626-201ENST00000385032 94 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 MIR548I2-201ENST00000408348 149 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 BMS1P22-201ENST00000414726 313 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 RN7SL330P-201ENST00000469709 307 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 RN7SL20P-201ENST00000488827 297 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.797-201ENST00000515977 94 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 RNU6-586P-201ENST00000517265 104 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC021269.2-201ENST00000532318 330 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC107016.2-201ENST00000547968 190 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC079600.2-201ENST00000550076 130 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC025754.2-201ENST00000606491 432 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AC004832.4-201ENST00000608952 331 ntBASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC87Q9NVE4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 RNU6-275P-201ENST00000364910 107 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 MTCO2P33-201ENST00000402100 465 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 U6atac.2-201ENST00000408644 118 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 RNU5E-9P-201ENST00000411164 104 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 EBAG9P1-201ENST00000418955 543 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 HMGN1P18-201ENST00000457642 277 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 RNU7-57P-201ENST00000459540 60 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 AC109329.2-201ENST00000519658 482 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 AC099778.2-201ENST00000610904 211 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.802-201ENST00000614892 130 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 AC002064.3-201ENST00000623448 346 ntBASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC87Q9NVE4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU6-271P-201ENST00000363858 105 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 Y_RNA.293-201ENST00000364908 93 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 SNORD31B-201ENST00000364977 69 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU6-449P-201ENST00000383914 107 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU6-144P-201ENST00000383951 107 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 RNU6-1274P-201ENST00000384557 107 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 MIR196B-201ENST00000384852 84 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 MIR526A2-201ENST00000390198 65 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 MIR873-201ENST00000401120 77 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 AL606753.1-201ENST00000427435 87 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 HSPE1P13-201ENST00000451143 297 ntBASIC3.74□□□□□ -1.81
CCDC87Q9NVE4 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms