Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SERF1AP1-201ENST00000514575 187 ntBASIC2.71□□□□□ -1.98
TDP1Q9NUW8 RNU2-12P-201ENST00000517216 168 ntBASIC2.71□□□□□ -1.98
TDP1Q9NUW8 AC091544.4-201ENST00000555268 342 ntBASIC2.71□□□□□ -1.98
TDP1Q9NUW8 AC108206.1-201ENST00000570186 4159 ntBASIC2.71□□□□□ -1.98
TDP1Q9NUW8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
TDP1Q9NUW8 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.60-201ENST00000362831 98 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 RNU6-379P-201ENST00000363813 104 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 RNU6-438P-201ENST00000365561 103 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 RNU1-109P-201ENST00000383960 147 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.489-201ENST00000384410 101 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 SNORA67.4-201ENST00000384688 142 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 SNORA53-201ENST00000391141 249 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 AL357139.1-201ENST00000407792 426 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 MIR1185-2-201ENST00000408687 86 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 OOSP1P1-201ENST00000423265 274 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 POLR2KP2-201ENST00000438155 177 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 RNU7-57P-201ENST00000459540 60 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 SRIP1-201ENST00000489235 288 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 RNU2-31P-201ENST00000516954 155 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 AL590808.1-201ENST00000618696 141 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 AL355596.1-201ENST00000565399 3996 ntBASIC2.7□□□□□ -1.98
TDP1Q9NUW8 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
TDP1Q9NUW8 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
TDP1Q9NUW8 RNU6-326P-201ENST00000365480 107 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.383-201ENST00000383855 97 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 RNU6-975P-201ENST00000384296 105 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 MIR592-201ENST00000384959 97 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
TDP1Q9NUW8 MRPS10P1-201ENST00000448483 130 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AC016717.1-201ENST00000448918 286 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 MTND4LP30-201ENST00000454092 297 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AC114982.1-201ENST00000469402 321 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 RNU6-991P-201ENST00000516168 107 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 RNU6-667P-201ENST00000517186 102 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AC006380.1-201ENST00000603598 186 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AC010900.2-201ENST00000604508 210 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 AL449363.1-201ENST00000617815 186 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 CTSLP2-204ENST00000629029 392 ntBASIC2.69□□□□□ -1.98
TDP1Q9NUW8 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 SNORA25B-201ENST00000365507 128 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.418-201ENST00000384029 102 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 MIR27B-201ENST00000385129 97 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 MIR548H3-201ENST00000408771 118 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC074290.1-201ENST00000448883 135 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 TRBV12-1-201ENST00000479785 344 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 RNU6-1023P-201ENST00000516137 106 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.673-201ENST00000516306 88 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 AC090425.1-201ENST00000610007 140 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.68□□□□□ -1.98
TDP1Q9NUW8 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
TDP1Q9NUW8 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.136-201ENST00000363444 102 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.416-201ENST00000384014 113 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 RNU6-418P-201ENST00000384035 107 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 SNORD14D-201ENST00000384390 87 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 U3.40-201ENST00000408706 208 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AL137159.1-201ENST00000452808 512 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 RN7SL499P-201ENST00000481141 276 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AC093259.1-201ENST00000509755 300 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AC008413.1-201ENST00000511864 177 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 RNA5SP320-201ENST00000516263 124 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AC025754.2-201ENST00000606491 432 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 AC037487.3-201ENST00000606668 112 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 U4atac.1-201ENST00000618345 95 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 U4.3-201ENST00000621047 82 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 snoZ196.1-201ENST00000625269 89 ntBASIC2.67□□□□□ -1.98
TDP1Q9NUW8 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 SNORD115-30-201ENST00000364117 82 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.243-201ENST00000364481 109 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 SNORA20.1-201ENST00000364790 130 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.332-201ENST00000365271 113 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.352-201ENST00000365439 102 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 Y_RNA.478-201ENST00000384358 107 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 AL603910.2-201ENST00000407268 136 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 AC009238.1-201ENST00000442165 424 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 AC009237.6-201ENST00000446969 424 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 RNU6-948P-201ENST00000516374 107 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 RNU6-388P-201ENST00000517012 105 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 RNU6-389P-201ENST00000517048 105 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms