Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR5701-1-201ENST00000585138 82 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 MIR502-201ENST00000606349 86 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 snoU13.31-201ENST00000607291 104 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 AC010999.1-201ENST00000611856 324 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 MIR5701-2-201ENST00000615634 82 ntBASIC1.5□□□□□ -2.17
DDX28Q9NUL7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
DDX28Q9NUL7 CASC19-280ENST00000642102 1351 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.415-201ENST00000384012 112 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RNU6-281P-201ENST00000384212 103 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RNU1-139P-201ENST00000391307 165 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 MIR1267-201ENST00000408723 78 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RN7SKP51-201ENST00000410781 304 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RPL37P10-201ENST00000412884 288 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 AC016909.1-201ENST00000415916 166 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.49□□□□□ -2.17
DDX28Q9NUL7 JTBP1-201ENST00000441314 247 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 snoU13.9-201ENST00000458927 103 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RNU6-1114P-201ENST00000516022 107 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.670-201ENST00000516255 105 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RNU7-30P-201ENST00000516835 62 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 AC024995.1-201ENST00000523014 93 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.49□□□□□ -2.17
DDX28Q9NUL7 AK6P2-201ENST00000549020 471 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 SNORA77B-201ENST00000578179 125 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 MIR3683-201ENST00000580847 82 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 MIR4781-201ENST00000585250 76 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 AC122108.2-201ENST00000611946 526 ntBASIC1.49□□□□□ -2.17
DDX28Q9NUL7 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.106-201ENST00000363189 100 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.248-201ENST00000364501 109 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.473-201ENST00000384333 102 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 RNU6-601P-201ENST00000384540 107 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 MIR190B-201ENST00000401119 79 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 USP9YP16-201ENST00000430287 407 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.48□□□□□ -2.17
DDX28Q9NUL7 USP9YP23-201ENST00000455085 407 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.48□□□□□ -2.17
DDX28Q9NUL7 SNORD13-201ENST00000459299 104 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 AC082651.2-201ENST00000496833 166 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.673-201ENST00000516306 88 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.48□□□□□ -2.17
DDX28Q9NUL7 AC005668.1-201ENST00000571142 476 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.48□□□□□ -2.17
DDX28Q9NUL7 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.48□□□□□ -2.17
DDX28Q9NUL7 MIR5695-201ENST00000579717 85 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 MZT1P2-201ENST00000604387 248 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 AC005014.2-201ENST00000607795 599 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.48□□□□□ -2.17
DDX28Q9NUL7 RNU6-845P-201ENST00000362578 103 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 Y_RNA.279-201ENST00000364763 95 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 RNU6-700P-201ENST00000391043 107 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AL627390.1-201ENST00000396055 340 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC073910.1-201ENST00000445047 438 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC005908.1-201ENST00000468701 347 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC116353.2-201ENST00000505332 712 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 RNU6-250P-201ENST00000516958 103 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC090617.3-201ENST00000573670 475 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC005899.2-201ENST00000584353 90 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 AC009229.3-201ENST00000608056 282 ntBASIC1.47□□□□□ -2.17
DDX28Q9NUL7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
DDX28Q9NUL7 MTND5P16-201ENST00000460269 1703 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 MTND5P35-201ENST00000557537 1720 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.88-201ENST00000363029 99 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 RNY1P16-201ENST00000363063 111 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 SNORA33-201ENST00000363664 130 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.160-201ENST00000363677 92 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.46□□□□□ -2.18
DDX28Q9NUL7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 SNORA67.5-201ENST00000391036 107 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 RNA5SP323-201ENST00000391094 133 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 RNA5SP467-201ENST00000391274 118 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 MTCYBP10-201ENST00000424905 650 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 MTND1P2-201ENST00000430604 821 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AC092473.1-201ENST00000441098 221 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AC103851.1-201ENST00000506833 274 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.683-201ENST00000516508 93 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 CYCSP23-201ENST00000519781 313 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AC105029.1-201ENST00000520250 669 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.46□□□□□ -2.18
DDX28Q9NUL7 PISRT1.1-201ENST00000616930 107 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.46□□□□□ -2.18
DDX28Q9NUL7 AL161722.3-201ENST00000605789 2983 ntBASIC1.46□□□□□ -2.18
DDX28Q9NUL7 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
DDX28Q9NUL7 RNU6-222P-201ENST00000362438 107 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 RNU6-1266P-201ENST00000362794 105 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.166-201ENST00000363730 102 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 RNU6-457P-201ENST00000363999 107 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.226-201ENST00000364337 114 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 Y_RNA.364-201ENST00000365532 101 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 MT-TL1-201ENST00000386347 75 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
DDX28Q9NUL7 RNU1-78P-201ENST00000391248 165 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 BTF3P4-201ENST00000418852 495 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 MTND3P10-201ENST00000450967 341 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 snoU13.27-201ENST00000459278 104 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 AL163195.1-201ENST00000496941 348 ntBASIC1.45□□□□□ -2.18
DDX28Q9NUL7 RNU1-142P-201ENST00000516682 145 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms