Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 USP9YP16-201ENST00000430287 407 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 MTND4P18-201ENST00000447010 465 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 USP9YP23-201ENST00000455085 407 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC010409.1-201ENST00000487382 476 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC011406.1-201ENST00000512440 370 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AL117351.2-201ENST00000513571 157 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNU6-1114P-201ENST00000516022 107 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNU6-507P-201ENST00000516045 100 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNU6-948P-201ENST00000516374 107 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 MIR4498-201ENST00000577599 66 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC125232.2-201ENST00000592457 143 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC113139.1-201ENST00000605049 239 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 BX248123.2-201ENST00000606318 124 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC092794.2-201ENST00000620933 563 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AL359697.1-201ENST00000624879 587 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNU6-661P-201ENST00000362409 107 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 RNU6-280P-201ENST00000364145 104 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 RNU6-793P-201ENST00000384233 104 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 BTF3P4-201ENST00000418852 495 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 EIF1P2-201ENST00000428233 350 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 HSPE1P21-201ENST00000438283 308 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 MTCO3P10-201ENST00000455912 772 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC114982.1-201ENST00000469402 321 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC093303.1-201ENST00000514549 295 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 RNU6-559P-201ENST00000516151 98 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 RNU6-875P-201ENST00000516488 106 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 RNU2-34P-201ENST00000516534 121 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 HSBP1P1-201ENST00000555205 166 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 FRG2DP-202ENST00000566967 323 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 snoU13.31-201ENST00000607291 104 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AL132765.2-201ENST00000610812 351 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 MIR1244-1-201ENST00000612829 85 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC126177.8-201ENST00000618339 1015 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC006001.4-201ENST00000622243 395 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 MIR1244-3-201ENST00000635744 85 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 MIR1244-2-201ENST00000636449 85 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 MIR1244-4-202ENST00000636813 85 ntBASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
RPF1Q9H9Y2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.179-201ENST00000363844 90 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU6-99P-201ENST00000364721 107 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.364-201ENST00000365532 101 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.557-201ENST00000384680 107 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MIR30A-201ENST00000385092 71 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU6-700P-201ENST00000391043 107 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MIR934-201ENST00000401241 83 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU6-1001P-201ENST00000411265 100 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MTCYBP10-201ENST00000424905 650 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AC092423.1-201ENST00000430165 186 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RPL23AP50-201ENST00000434149 455 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU7-87P-201ENST00000459343 62 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RPL17P19-201ENST00000489069 552 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU6-1053P-201ENST00000515930 101 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MIR4303-201ENST00000581299 66 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MIR548S-201ENST00000581352 82 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AC005899.2-201ENST00000584353 90 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AL512598.1-201ENST00000610158 273 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 AC010999.1-201ENST00000611856 324 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 MTND4LP32-201ENST00000636111 270 ntBASIC1.68□□□□□ -2.14
RPF1Q9H9Y2 RNU6-112P-201ENST00000363599 104 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNORA33-201ENST00000363664 130 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 RNU6-60P-201ENST00000364792 103 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.358-201ENST00000365491 99 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 RNU6-890P-201ENST00000384121 107 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNORD116-29-201ENST00000384516 83 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 MIR517C-201ENST00000385103 95 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNORA67.6-201ENST00000391093 99 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNORA75.6-201ENST00000391318 127 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 RNU4-62P-201ENST00000410125 130 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AC245047.4-201ENST00000433189 144 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AC027575.1-201ENST00000481064 460 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.676-201ENST00000516393 96 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNORA31.17-201ENST00000516953 127 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AC093023.1-201ENST00000547375 507 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AC004584.2-201ENST00000570407 410 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AC090617.3-201ENST00000573670 475 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 AL357075.2-201ENST00000614906 189 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 snoZ196.1-201ENST00000625269 89 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 MIR338-201ENST00000636369 67 ntBASIC1.67□□□□□ -2.14
RPF1Q9H9Y2 MTND5P35-201ENST00000557537 1720 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 RNA5SP361-201ENST00000362686 118 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 RNU1-42P-201ENST00000364033 160 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 RNU1-96P-201ENST00000364163 162 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 RNU6-439P-201ENST00000384188 106 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 RNU6-296P-201ENST00000384608 107 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 MIR329-1-201ENST00000385028 80 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 MIR1323-201ENST00000408090 73 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 HMGN2P34-201ENST00000437647 269 ntBASIC1.66□□□□□ -2.14
RPF1Q9H9Y2 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 196.4 ms