Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 MIR4635-201ENST00000583759 79 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 MIR3616-201ENST00000584070 92 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 AC004832.5-201ENST00000608677 401 ntBASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PCIF1Q9H4Z3 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.82-201ENST00000363000 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.92-201ENST00000363043 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.122-201ENST00000363331 96 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.200-201ENST00000364018 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.217-201ENST00000364214 105 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.235-201ENST00000364412 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP125-201ENST00000364843 120 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.306-201ENST00000365015 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.312-201ENST00000365089 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.322-201ENST00000365151 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP240-201ENST00000365355 128 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNU6-975P-201ENST00000384296 105 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 SNORD14D-201ENST00000384390 87 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 SNORD88.1-201ENST00000408684 91 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.590-201ENST00000410140 107 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-48P-201ENST00000410694 191 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-63P-201ENST00000410792 194 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNU2-61P-201ENST00000411069 191 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 AC108938.1-201ENST00000451204 136 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.650-201ENST00000459002 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.641-201ENST00000459414 105 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.777-201ENST00000516982 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 RNA5SP490-201ENST00000517141 136 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.771-201ENST00000598668 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 AC005828.6-201ENST00000606610 232 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 Y_RNA.789-201ENST00000622480 102 ntBASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
PCIF1Q9H4Z3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.94
PCIF1Q9H4Z3 SNORA5B-201ENST00000363786 132 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.361-201ENST00000365515 120 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 AL139281.1-201ENST00000422120 335 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 MTND5P15-201ENST00000434246 349 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 HMGN2P18-201ENST00000450680 270 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 EEF1B2P7-201ENST00000451177 676 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 AC114982.1-201ENST00000469402 321 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 RNA5SP356-201ENST00000515972 94 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 MIR4319-201ENST00000577285 85 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 MIR4282-201ENST00000583613 67 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 AL355297.2-201ENST00000604792 129 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 AC011921.3-201ENST00000605540 361 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 snoZ196.1-201ENST00000625269 89 ntBASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
PCIF1Q9H4Z3 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.297-201ENST00000364950 91 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 MIR627-201ENST00000384979 97 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 AL357139.1-201ENST00000407792 426 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 RNA5SP344-201ENST00000411081 104 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-57P-201ENST00000411348 103 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 AC104332.2-201ENST00000429959 156 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 AL135790.2-201ENST00000437701 267 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 SNORD2.1-201ENST00000458762 69 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 AC018868.1-201ENST00000491307 315 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.679-201ENST00000516416 91 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCIF1Q9H4Z3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.292-201ENST00000364904 97 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-438P-201ENST00000365561 103 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-418P-201ENST00000384035 107 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.785-201ENST00000384290 109 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 MIR9-1-201ENST00000385198 89 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RNA5SP210-201ENST00000391034 120 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 AL445687.1-201ENST00000439946 251 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 AC074290.1-201ENST00000448883 135 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-221P-201ENST00000459541 99 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RN7SL297P-201ENST00000483161 293 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-991P-201ENST00000516168 107 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 RN7SKP282-201ENST00000516824 299 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 MIR6733-201ENST00000635723 61 ntBASIC2.88□□□□□ -1.95
PCIF1Q9H4Z3 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 RNU6-1272P-201ENST00000362776 107 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.83-201ENST00000363005 113 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.199-201ENST00000364014 102 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 RNY4P28-201ENST00000365281 93 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 Z96811.1-201ENST00000445880 108 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 SNORA59A-201ENST00000459326 152 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 AC010531.2-201ENST00000465012 153 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 Y_RNA.700-201ENST00000516806 100 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 SNORA81.3-201ENST00000517283 198 ntBASIC2.87□□□□□ -1.95
PCIF1Q9H4Z3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 144 ms