Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC055731.1-201ENST00000474387 401 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 HMGN1P7-201ENST00000491722 313 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC022493.2-201ENST00000506122 481 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.675-201ENST00000516389 149 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 RAB11AP2-201ENST00000545905 639 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC015720.1-201ENST00000565251 277 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 SNORD11B-201ENST00000607707 90 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AC083806.3-201ENST00000614016 455 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 AL159152.1-201ENST00000635019 2587 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 ZNF702P-202ENST00000434269 1966 ntBASIC1.98□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.67-201ENST00000362870 100 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 SNORD115-8-201ENST00000363856 82 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNY1-201ENST00000364228 113 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNU6-879P-201ENST00000364328 108 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 SNORD114-6-201ENST00000364393 72 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 SNORD115-38-201ENST00000365037 82 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP465-201ENST00000391195 109 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 UBE2V1P7-201ENST00000446395 340 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC016925.1-201ENST00000458303 298 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP233-201ENST00000459153 113 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP220-201ENST00000516298 104 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNU6-107P-201ENST00000516643 102 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC093027.1-201ENST00000546698 429 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC027288.2-201ENST00000553028 243 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC004584.2-201ENST00000570407 410 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AL117336.2-201ENST00000602435 335 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AL078603.1-201ENST00000603824 313 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 AC010999.1-201ENST00000611856 324 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 MIR1244-1-201ENST00000612829 85 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 U1.36-201ENST00000620684 176 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 MIR1244-3-201ENST00000635744 85 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 MIR1244-2-201ENST00000636449 85 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 MIR1244-4-202ENST00000636813 85 ntBASIC1.97□□□□□ -2.09
ZNF541Q9H0D2 RNU1-62P-201ENST00000362599 164 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 SNORD114-26-201ENST00000363543 72 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.358-201ENST00000365491 99 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.364-201ENST00000365532 101 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 SNORD116-29-201ENST00000384516 83 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 MIR625-201ENST00000385047 85 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 RNU2-40P-201ENST00000410833 196 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 RNA5SP489-201ENST00000410986 109 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 AC114482.1-201ENST00000418010 247 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 RNU7-57P-201ENST00000459540 60 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 RNU6-344P-201ENST00000516635 111 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 AC022868.1-201ENST00000517767 391 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 AC090617.3-201ENST00000573670 475 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 MIR4421-201ENST00000578133 69 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 AC091932.3-201ENST00000624223 323 ntBASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
ZNF541Q9H0D2 RNU6-222P-201ENST00000362438 107 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 RNU4-73P-201ENST00000363164 141 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 RNU6-53P-201ENST00000365367 106 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 RNU6-793P-201ENST00000384233 104 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 SUMO2P12-201ENST00000405924 140 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.605-201ENST00000410577 105 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 AC016717.1-201ENST00000448918 286 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 MTND3P22-201ENST00000510932 243 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 RNU6-1114P-201ENST00000516022 107 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 SUMO2P18-201ENST00000518873 252 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 AC091144.1-201ENST00000519573 138 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 MIR4448-201ENST00000584360 86 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 AC008555.8-201ENST00000623602 2168 ntBASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.58-201ENST00000362807 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.154-201ENST00000363624 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNU4-13P-201ENST00000364019 141 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNY3P1-201ENST00000365085 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 SNORD114-22-201ENST00000365423 72 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNY3-201ENST00000365484 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNU6-890P-201ENST00000384121 107 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 MT-TD-201ENST00000387419 68 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 SNORA75.6-201ENST00000391318 127 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNU6-1156P-201ENST00000410365 100 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNA5SP450-201ENST00000411206 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RPL23AP6-201ENST00000446637 472 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 MTCO3P10-201ENST00000455912 772 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 Y_RNA.632-201ENST00000459189 102 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNU6-470P-201ENST00000515954 104 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 RNU6-120P-201ENST00000516077 103 ntBASIC1.94□□□□□ -2.1
ZNF541Q9H0D2 AC093023.1-201ENST00000547375 507 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms